Plant FIBer expression Database

Lus10008094 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25120 148 / 2e-45 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013127
[exp]
300 / 5e-105 AT3G25120 186 / 4e-60 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G246000
[exp]
205 / 1e-67 AT3G25120 173 / 4e-55 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02466 Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence
>Lus10008094 pacid=23169738 polypeptide=Lus10008094 locus=Lus10008094.g ID=Lus10008094.BGIv1.0 annot-version=v1.0
ATGGCTTCAGGCGGTGATTCAAAGCCGACGCCGCCGTCTCCTTCCTTCTCCGATGATTGGAAGGAGCGTATACTACTCCCAACTATTCTTGCAGGAGCTT
CGGGTGGAGGATTTGGGTTGTTATCTAAGCATCGGAATGGGCAAGGGATTTCCACTGTTTCTGCTGCTTACGCTGCTAATTTCGCCATCGTCACTGGCTG
CTATTGCGGGGCAAGGGAATTCGTAAGAGTAACGCGTAAATCAGACCACGACGATCTGCTAAACTCTGCCGTTGCTGGGTTCAGTACCGGTGCTCTCCTC
GGGCGTTTCCAAGCGGGTCAGATGGGCGCAATCCGGTACTCGGTCATGTTCAGCATTGCAGGGACTGCGGTAGATTACGCTACGATCAAGCTGAGACCGA
GATTAAGGAGCTGGAAAGAGTCCATATTCGGCGATGAAAATGGATGGAAGTTGCCGGTATGGTCTCCGATACAAGTGCTCGACGAGGAGGCTCTGGCTAA
GAAAGAAGCTCAAGAGAAGGAATTTAATGCACAAAGAGCAGCTCTTCTTAAGCTAACAAAAGAAGAGTCGTGA
AA sequence
>Lus10008094 pacid=23169738 polypeptide=Lus10008094 locus=Lus10008094.g ID=Lus10008094.BGIv1.0 annot-version=v1.0
MASGGDSKPTPPSPSFSDDWKERILLPTILAGASGGGFGLLSKHRNGQGISTVSAAYAANFAIVTGCYCGAREFVRVTRKSDHDDLLNSAVAGFSTGALL
GRFQAGQMGAIRYSVMFSIAGTAVDYATIKLRPRLRSWKESIFGDENGWKLPVWSPIQVLDEEALAKKEAQEKEFNAQRAALLKLTKEES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G25120 Mitochondrial import inner mem... Lus10008094
[exp]
0 1
AT5G05210 Surfeit locus protein 6 (.1.2) Lus10014455
[exp]
2.2 0.9059
AT1G03330 Small nuclear ribonucleoprotei... Lus10029641
[exp]
3.2 0.9032
AT4G32930 unknown protein Lus10005503
[exp]
4.9 0.8980
AT1G12580 PEPKR1 phosphoenolpyruvate carboxylas... Lus10015009
[exp]
6.0 0.8806
AT3G10530 Transducin/WD40 repeat-like su... Lus10035742
[exp]
7.9 0.8898
AT5G15220 Ribosomal protein L27 family p... Lus10007170
[exp]
9.5 0.8902
AT5G27650 Tudor/PWWP/MBT superfamily pro... Lus10032634
[exp]
9.6 0.8957
AT5G47890 NADH-ubiquinone oxidoreductase... Lus10030922
[exp]
9.9 0.8786
AT1G64385 unknown protein Lus10032376
[exp]
13.6 0.8933
AT5G03345 unknown protein Lus10013817
[exp]
16.4 0.8615

Lus10008094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.