Plant FIBer expression Database

Lus10008096 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25625 62 / 6e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013129
[exp]
202 / 8e-68 AT2G25625 60 / 7e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G248300
[exp]
96 / 7e-26 AT2G25625 84 / 2e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10008096 pacid=23169789 polypeptide=Lus10008096 locus=Lus10008096.g ID=Lus10008096.BGIv1.0 annot-version=v1.0
ATGGCCGTCACTTGCTCCCTGATCAACCGCCTCCCTCCCTCGCCGCCGGCGACCTCCTCTTCCAACCCAAATCACCCTTCGAATTCTACAACCTCCCCTG
CATCGATCCCATGGTTCAAGAGCGACAAGTTGAAGAGCAGATGCATAGCAAGCGTGGCATGCCTAGTGATCGGCCTTGAAACCAACTGGGCCATCGCCGC
CGTAGACATACCAGCTATGACGGCGGAGAAGGTGTCAGCACGGAAGTGGAGCGACAAGAGGATGTGTCCTGCGTGGCAAATGAACTCGTTGGAGACCATC
GTCCCGGAGGATCTCCCTCGGCCGTTTACTCGTCGGAGATGGGAGTCCGTTGAATTCCCCGGCGGGGGGAATATTAATAATGATCGTTCCACGGCAGCGC
GTGGTCATCAAGTTGTTAGGGGTAGTAGTAGCAGTAAAGGTTGTTTTTCAATGTAA
AA sequence
>Lus10008096 pacid=23169789 polypeptide=Lus10008096 locus=Lus10008096.g ID=Lus10008096.BGIv1.0 annot-version=v1.0
MAVTCSLINRLPPSPPATSSSNPNHPSNSTTSPASIPWFKSDKLKSRCIASVACLVIGLETNWAIAAVDIPAMTAEKVSARKWSDKRMCPAWQMNSLETI
VPEDLPRPFTRRRWESVEFPGGGNINNDRSTAARGHQVVRGSSSSKGCFSM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25625 unknown protein Lus10008096
[exp]
0 1
AT5G02380 MT2B metallothionein 2B (.1) Lus10016546
[exp]
2.0 0.8770
AT2G25625 unknown protein Lus10013129
[exp]
5.4 0.8801
AT1G13680 PLC-like phosphodiesterases su... Lus10035130
[exp]
6.6 0.8040
AT4G24580 REN1 ROP1 ENHANCER 1, Rho GTPase ac... Lus10036167
[exp]
7.7 0.8748
AT5G20700 Protein of unknown function (D... Lus10027595
[exp]
8.9 0.8604
AT1G52800 2-oxoglutarate (2OG) and Fe(II... Lus10021025
[exp]
12.2 0.7811
AT1G77920 bZIP bZIP transcription factor fami... Lus10042005
[exp]
12.6 0.8480
AT3G54140 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE T... Lus10024300
[exp]
16.4 0.8327
AT3G01860 unknown protein Lus10041572
[exp]
18.7 0.8286
AT2G39650 Protein of unknown function (D... Lus10020938
[exp]
20.4 0.8141

Lus10008096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.