Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52800 209 / 9e-66 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 203 / 2e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 187 / 6e-57 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 177 / 1e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 151 / 2e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 142 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 134 / 5e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 133 / 2e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 115 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G21420 112 / 4e-28 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013132 [exp] 565 / 0 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 204 / 1e-63 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 194 / 1e-59 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013130 [exp] 182 / 2e-55 AT1G52820 200 / 3e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 162 / 5e-47 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023160 [exp] 152 / 1e-44 AT1G52820 244 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006575 [exp] 132 / 1e-36 AT1G52820 221 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005773 [exp] 133 / 2e-36 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 130 / 2e-35 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248000 [exp] 364 / 8e-126 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 362 / 1e-125 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 224 / 1e-71 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 192 / 2e-59 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 191 / 7e-59 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 190 / 3e-58 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 165 / 1e-48 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 162 / 2e-47 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146100 [exp] 129 / 2e-34 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146000 [exp] 127 / 9e-34 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008097 pacid=23169790 polypeptide=Lus10008097 locus=Lus10008097.g ID=Lus10008097.BGIv1.0 annot-version=v1.0 ATGGTGGATATCCCACTCATCAACTTGGCCGGCGTCTCCGTCGGCGGCAACACCGTCGCCTCAGAGTGGCGGGGACTTTGCGACAAAGTAAGGGAGGCGT GCGAGACCCACGGCTGTTTCTGCATCAAGACCGAAGAAATCTCCGGCGAGATGAGGGACAGGATGGTAAAAGCGCTGAGTCAACTCTTCGACCTGCCGGA GGAGACCAAGAAGCTCCACGTCCACCCGAAGCCTTACCGGAGCTACCTCGGCAAAAACGACGTCGTCCCTTACCTCGAGAGCTTCGGCGTCGACCATTCC CCTCAGCATGATGAAGTTGAAGCTTTTTCTCAACTCATGTGGCCCCTTGGCAACCCCTCTTTCAATGAAGCATTGAACGAGATGAGTACAAAGATGCTGG AGCTAAACCTCTTGCTGATGAAGATGATCTTCACCAGCTTCGGACTCGACAGCCAGCTGTACGAGTCCTATGCGGCGGAGAGTGTGAGCAACCTCCGCCT CATGAAGTACAAGGTCCCGCCGCCCACCGCGGATCCAGTTCCTAGTCTGGTGGCCCACACTGACAAGAACGCTCTGACCATCCTGGGCCAGAACGACGTT CAGGGTCTGGAGGTACAGACCAAGGATGACGGTAAGTGGGTCCAGGTTGTGATCCCAGAGGGCGCGGTCATCGCCATCGTGGGGGACGCACTCAAGGCGT GGAGCAACGGGAGGCTCCACGCTGTGAGGCACAGGGTGGTGACGAGAAGTGACAGGGAGAGGTATTCGTGGGGGATGTTTATGATGCCGAATGACTGTGT CACGATCGAGGTGGCCAAGGAGTTGGTTGACAAGGAGCACCCTTTGTTGTATCGGCCCTTTAACTATGCCGAGTTTTTGGCCTACTACGTCGGCAAGTTG GGCGACGATGCTCTCGAGATTTATGCCGGTGTCCCGCCTATCGCGATTGCCTAG
AA sequence Show only first row Show all	>Lus10008097 pacid=23169790 polypeptide=Lus10008097 locus=Lus10008097.g ID=Lus10008097.BGIv1.0 annot-version=v1.0 MVDIPLINLAGVSVGGNTVASEWRGLCDKVREACETHGCFCIKTEEISGEMRDRMVKALSQLFDLPEETKKLHVHPKPYRSYLGKNDVVPYLESFGVDHS PQHDEVEAFSQLMWPLGNPSFNEALNEMSTKMLELNLLLMKMIFTSFGLDSQLYESYAAESVSNLRLMKYKVPPPTADPVPSLVAHTDKNALTILGQNDV QGLEVQTKDDGKWVQVVIPEGAVIAIVGDALKAWSNGRLHAVRHRVVTRSDRERYSWGMFMMPNDCVTIEVAKELVDKEHPLLYRPFNYAEFLAYYVGKL GDDALEIYAGVPPIAIA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	0	1
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	1.4	0.9539
AT4G12010			Disease resistance protein (TI...		Lus10028058 [exp]	2.2	0.9426
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	3.9	0.9441
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	4.5	0.9445
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	6.0	0.9434
					Lus10041915 [exp]	8.0	0.9313
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	9.2	0.9248
AT3G21710			unknown protein		Lus10039666 [exp]	9.4	0.9280
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	9.7	0.9089
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	10.1	0.9372

Compare expression of checked genes

Lus10008097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.