Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26170 687 / 0 CYP711A1, MAX1 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) AT3G26310 106 / 2e-24 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G24900 106 / 3e-24 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT5G57260 103 / 2e-23 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT2G45560 102 / 6e-23 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT5G24910 97 / 4e-21 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G25120 97 / 4e-21 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT2G46950 96 / 9e-21 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT2G46960 96 / 1e-20 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT5G67310 94 / 3e-20 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013133 [exp] 961 / 0 AT2G26170 731 / 0.0 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) Lus10026085 [exp] 106 / 4e-24 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10032026 [exp] 105 / 1e-23 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10005878 [exp] 104 / 2e-23 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10035502 [exp] 103 / 4e-23 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 103 / 5e-23 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10008423 [exp] 100 / 5e-22 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10024577 [exp] 100 / 6e-22 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10036817 [exp] 99 / 2e-21 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062100 [exp] 767 / 0 AT2G26170 726 / 0.0 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) Potri.006G226700 [exp] 766 / 0 AT2G26170 723 / 0.0 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) Potri.005G037100 [exp] 113 / 2e-26 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037201 [exp] 113 / 2e-26 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.003G007900 [exp] 102 / 8e-23 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.008G026300 [exp] 100 / 3e-22 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.003G114400 [exp] 100 / 3e-22 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.008G026200 [exp] 100 / 5e-22 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 99 / 6e-22 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 99 / 1e-21 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10008098 pacid=23169762 polypeptide=Lus10008098 locus=Lus10008098.g ID=Lus10008098.BGIv1.0 annot-version=v1.0 ATGAGTACTCAGGCAGCAAAAGATGTAGTCTTTTCATTAAGTTACTTCGTTCCGGCCGGCGCAGTGCTGGTGACGGCGGCCGCGATGCTGTTAGGGACGG TGACGGTTTACTTGTACGCGCCTTACTGGGGAGTGAGGAAGATCCCTGGTCCGCCGACTGTGCCACTACTTGGACACCTCCCTCTGATGGCGAAATACGG CCCTGATGTCTTCTCTGTTCTTGCTAAGCAATATGGTCCCATTTACAGGTTTCATATGGGAAGACAGCCACTGGTGATCATAGCAGATCCAGAGCTATGC AGAGAAGTAGGAATCAAGAAATTTAAACACATCCCAAACAGAAGCATCCCTTCACCAATTGCTTCATCTCCACTCCACCAAAAGGGTCTCTTCTTCACCA GGGACACCAGGTGGTCAACCATGAGAAACACAATCCTCTCAGTCTACCAGCCTTCCCACCTGGCAGGGCTCATCCCCACCATGCAATCCTACATCGAGTC CGCGACATCGAACCTCTTTGACCAACAGGACATCACGTTCTCGAACCTCTCGCTCGAGCTTGCCACGGATGTCATCGGACAGGCTGCTTTCGGGGTCGAA TTCGGCCTTTCTAAGAAGAATAAGGTCGAGGGTTTGACAAAGGGTGGTGGTGATGGTAGTCATGGTGGGAGTAATCAAGATGATGAAGTCCGAGTTTCGG ACTTCATCAACCAGCACATATACTCGACCACTCAGCTGAAGATGGACCTTTCGGGTTCGTTCTCCATCATCGTCGGACTACTCCTCCCCATCCTGCAGGA GCCTTTCAGGCAGATCCTGAAGCGAATACCGCAAACCATGGACTGGAAAGTGGACAGGACGAACAGAAACATAAGCGGGAGGCTGGACGAGATCGTGGCC CAAAGGATGACGGAGAAGAACCGGGGCTCGAAGAAGGACTTCCTGTCCCTCATCCTCAATGCGAGGGAGACACAGTCTGAGGATGTCGCCCGGACTGTGT TTGCTAATGACTACATAAGTGCTGTCGCTTATGAGCATCTTCTTGCTGGCTCTGCAACCACTGCCTTCACTCTGTCTTCTGTGCTCTACTTGGTTGCTGG ACATCCTGATGTTGAAGAGAAATTGGTGTCTGAAATTGATGCGTTCGGGCCGAGGGATCTTGTTCCAAGTGCTAGTGATCTTCAGCACAAGTTTCCTTAC TTAGATCAGGTGGTTAAGGAATCAATGAGGTACTATTTGGTTTCCCCTTTGATAGCCAGAGAGGTATCAACTGATGTAGAAATTGGAGGCTACCATCTAC CAAAGGGCACTTGGGTATGGTTGGCGCCGGGGGTTCTAGCAAAGGACCCGAAGAACTTCCCGGAGCCAGAGAAGTTCAAACCGGAGAGGTTCGATTCCAA CTGCGAGGAAGAGAAAGCGAGGCATCCTTACGCTTTCATCCCCTTCGGGATCGGCCCTCGAGCATGCATCGGCCAGAAGTTCTCCTTGCAAGAATTGAAG CTCTCGCTGATTCATCTGTACCGGAATTACGTTATCCGGCACTCCCCTGAGATGGAAAATCCCCTGGAATTGGAGTTTGGGATTGTTCTCAACTTCAAGC ATGGTGTGAAACTTACAGTCACCAGACGAACGTAG
AA sequence Show only first row Show all	>Lus10008098 pacid=23169762 polypeptide=Lus10008098 locus=Lus10008098.g ID=Lus10008098.BGIv1.0 annot-version=v1.0 MSTQAAKDVVFSLSYFVPAGAVLVTAAAMLLGTVTVYLYAPYWGVRKIPGPPTVPLLGHLPLMAKYGPDVFSVLAKQYGPIYRFHMGRQPLVIIADPELC REVGIKKFKHIPNRSIPSPIASSPLHQKGLFFTRDTRWSTMRNTILSVYQPSHLAGLIPTMQSYIESATSNLFDQQDITFSNLSLELATDVIGQAAFGVE FGLSKKNKVEGLTKGGGDGSHGGSNQDDEVRVSDFINQHIYSTTQLKMDLSGSFSIIVGLLLPILQEPFRQILKRIPQTMDWKVDRTNRNISGRLDEIVA QRMTEKNRGSKKDFLSLILNARETQSEDVARTVFANDYISAVAYEHLLAGSATTAFTLSSVLYLVAGHPDVEEKLVSEIDAFGPRDLVPSASDLQHKFPY LDQVVKESMRYYLVSPLIAREVSTDVEIGGYHLPKGTWVWLAPGVLAKDPKNFPEPEKFKPERFDSNCEEEKARHPYAFIPFGIGPRACIGQKFSLQELK LSLIHLYRNYVIRHSPEMENPLELEFGIVLNFKHGVKLTVTRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10008098 [exp]	0	1
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	3.9	0.7592
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	7.2	0.7188
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10016827 [exp]	7.3	0.7529
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	9.7	0.7591
AT1G33920		ATPP2-A4	phloem protein 2-A4 (.1)		Lus10040603 [exp]	9.9	0.6579
AT4G30660			Low temperature and salt respo...		Lus10035809 [exp]	16.7	0.7187
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	23.1	0.6586
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	26.2	0.6978
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	27.4	0.6487
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10013510 [exp]	35.8	0.5770

Compare expression of checked genes

Lus10008098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.