Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15550 136 / 6e-38 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT4G21690 123 / 3e-33 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G80340 122 / 6e-33 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G80330 114 / 2e-29 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G62380 109 / 3e-28 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G77330 109 / 3e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 110 / 5e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 110 / 5e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 106 / 7e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 104 / 5e-26 ATSRG1, SRG1 senescence-related gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013134 [exp] 333 / 3e-114 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013135 [exp] 310 / 7e-106 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10008100 [exp] 247 / 9e-81 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10011476 [exp] 143 / 3e-40 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013136 [exp] 130 / 4e-38 AT1G15550 97 / 6e-25 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10011980 [exp] 107 / 4e-27 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10040112 [exp] 107 / 4e-27 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10040380 [exp] 107 / 6e-27 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022192 [exp] 105 / 1e-26 AT5G43440 372 / 1e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033600 [exp] 200 / 8e-63 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 170 / 3e-51 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 130 / 2e-35 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 127 / 1e-34 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.011G134100 [exp] 110 / 2e-28 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G165400 [exp] 107 / 7e-27 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G006901 [exp] 103 / 8e-26 AT3G13610 520 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G025900 [exp] 103 / 2e-25 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G029700 [exp] 101 / 1e-24 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 100 / 1e-24 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008099 pacid=23169752 polypeptide=Lus10008099 locus=Lus10008099.g ID=Lus10008099.BGIv1.0 annot-version=v1.0 ATGCCTACAACAACAACTGTCTCCGAATCTCACCAAACCGTCCCTCTCGACTTCCACTCAATCCGCACAGTCCTAGAGACACACGTCTGGCCGCCTGGCG ACAACGATAAAGTGTTCAGGATTCCGATCGTCGACTTCTCAGGACTTTCTGAGAGTAGCCGGAAGCTAATCGTTGAGGCGTGCAAGAAGTGGGGCGTGTT CCAATTGACGAACCACGGGATTCCTTCCGAATTATTGACGAAGCTTTGGCCGGATCATCATTCCCGAGTGTTTTGCAATGTCATCGAAGACTTTCAACAG CGAATGACTAAGCTCGCCGCCAAACTTTTCCGACTAATCCTCCGGTCCCACAACACTTCGGAGCAAGAAATCCGGCTTATGTCAGCGCCGGAAAGCATCA TAACCAGCCTACAACTGAACTCATATCCGCCGTGCCCCAACCCGACCCAGGCAATGGGTTTGGCGCCCCACACCGACACTGCGTTGATCAGCCTTGTAAA CCAAGGCAGTGTCAAGGGTCAGGGTCTCCAAATCATTGGCGGCAACGGAGAGTGGGGAATGGTACCTCCGGTTCCCGGAGCATTGACCGTGAACGTCGGG GATCTCCTCCACATCATTTCCAACGGCCGGTTTCACACGGTTCGGCACAGAGTGGTAATTAAGGAGCCCATGTTGCAAAGGGTTTCTGTTACATTGTTTT ACTATCCGACGCCGGATTTTTTTTGTTGCTGGTTGGGGATGGCTCCGGCGAGGACGAAGCTCCGATGA
AA sequence Show only first row Show all	>Lus10008099 pacid=23169752 polypeptide=Lus10008099 locus=Lus10008099.g ID=Lus10008099.BGIv1.0 annot-version=v1.0 MPTTTTVSESHQTVPLDFHSIRTVLETHVWPPGDNDKVFRIPIVDFSGLSESSRKLIVEACKKWGVFQLTNHGIPSELLTKLWPDHHSRVFCNVIEDFQQ RMTKLAAKLFRLILRSHNTSEQEIRLMSAPESIITSLQLNSYPPCPNPTQAMGLAPHTDTALISLVNQGSVKGQGLQIIGGNGEWGMVPPVPGALTVNVG DLLHIISNGRFHTVRHRVVIKEPMLQRVSVTLFYYPTPDFFCCWLGMAPARTKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10008099 [exp]	0	1

Compare expression of checked genes

Lus10008099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.