Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21690 273 / 8e-90 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G15550 271 / 5e-89 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80340 250 / 9e-81 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G80330 241 / 6e-77 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G55290 166 / 5e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 165 / 1e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 159 / 2e-45 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 159 / 2e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 159 / 4e-45 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 156 / 3e-44 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013135 [exp] 517 / 0 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013134 [exp] 492 / 3e-175 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013137 [exp] 326 / 4e-113 AT4G21690 140 / 1e-40 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10011476 [exp] 288 / 4e-95 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013136 [exp] 246 / 4e-82 AT1G15550 97 / 6e-25 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10008099 [exp] 249 / 2e-81 AT4G21690 137 / 3e-38 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10022292 [exp] 170 / 1e-49 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10008824 [exp] 161 / 2e-46 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027399 [exp] 160 / 2e-45 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033600 [exp] 367 / 8e-127 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 363 / 4e-125 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 287 / 6e-95 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 279 / 1e-91 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.009G022800 [exp] 169 / 4e-49 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.001G381700 [exp] 162 / 1e-46 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G006901 [exp] 160 / 9e-46 AT3G13610 520 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G025900 [exp] 159 / 2e-45 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G023600 [exp] 157 / 8e-45 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G132400 [exp] 157 / 2e-44 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008100 pacid=23169774 polypeptide=Lus10008100 locus=Lus10008100.g ID=Lus10008100.BGIv1.0 annot-version=v1.0 ATGGTGAACATTTCGTCGAACACCATGACTGCAAAAACTACAGTCGTCTCCGACGCCTACGCACAATCCCCACTAAAATCTCACCAGATCGTCCCGCTCG ACTTCGACTCGATCCGCACCACCCTCCCGGAGACCCACGTCTGGCCTCCGGGCGCCGGCGATCAAGCGTTCCCGATTCCGGTCATCGACTTCTCAGAACC TTTGTCCGAAATCAGCCGGAACTCGCTGATCGTCGAGGCCTGCGAGAAGTGGGGCGTGTTCCAATTGACGAACCACGGGATTCCTTCCGAACTTTTGGCG GAGGTCGAAGCTCAGACGAGGCGGCTTTTCGCCCTCCCGGCCAGCAGGAAGCTGAAGGCTTTACGGTCTCCGAGCGGTGTCAGCGGGTACGGCCAGGCTA GGATTTCACAGTTCTTTGAGAAGCATATGTGGAACGAAGGGTTCACCGTCATGGGGTCTCCGGCGGATCATGCTGCTCAGCTTTGGCCGGACGATGATCG TTGCCGCCAAGTGTTCTGTGACGTCATCCAAGACTATCAACACCACACAACGGAGCTCGCCGCGAAACTTCTCCAACTAATCCTCCGGTCCCTCAACACC CCGGAGCAAGAAATCCGCCGTATCTCATCGCCAGAAAGCACCATCGCCAGCCTACAACTAAACTCGTACCCTCCGTGTCCTGACCCGAACCGGGCAATGG GTATGGCGCCCCACACAGACACTTCGTTGCTCACCCTCGTATACCAAGGCGGCGTCAAGGGTCTCCAAATCTTCGCTGGCGGCGAGTGGGGAATGGTACC TCCGGTTGCAGGAGCAGTGACGGTGAACGTCGGGGATCTCCTCCATGTCATTTCCAACGGCCGGTTTCAGACAGTTCGACACAGGGTGGTGCTTAAGGAG GCCGCTCCGCAAAGGGTTTCTGTTGCGTTGTTTTATTTTCCGACGCCGGAGTTTGTTTTGTCGCCGCCGGGGTTGGTCTCCGGCGACGTAGAAGCTCCGA TATTGTATAGGCCGTTGACTGTGAAGGAGTATATAGGGGTGAAATATAAAAGCTATCAGACTGCACTTGATGCAATAAAAAATTAG
AA sequence Show only first row Show all	>Lus10008100 pacid=23169774 polypeptide=Lus10008100 locus=Lus10008100.g ID=Lus10008100.BGIv1.0 annot-version=v1.0 MVNISSNTMTAKTTVVSDAYAQSPLKSHQIVPLDFDSIRTTLPETHVWPPGAGDQAFPIPVIDFSEPLSEISRNSLIVEACEKWGVFQLTNHGIPSELLA EVEAQTRRLFALPASRKLKALRSPSGVSGYGQARISQFFEKHMWNEGFTVMGSPADHAAQLWPDDDRCRQVFCDVIQDYQHHTTELAAKLLQLILRSLNT PEQEIRRISSPESTIASLQLNSYPPCPDPNRAMGMAPHTDTSLLTLVYQGGVKGLQIFAGGEWGMVPPVAGAVTVNVGDLLHVISNGRFQTVRHRVVLKE AAPQRVSVALFYFPTPEFVLSPPGLVSGDVEAPILYRPLTVKEYIGVKYKSYQTALDAIKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10008100 [exp]	0	1
AT5G19970			unknown protein		Lus10019451 [exp]	2.2	0.9331
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	6.3	0.9168
					Lus10012304 [exp]	13.0	0.9110
AT1G62560		FMOGS-OX3 ,FMO ...	flavin-monooxygenase glucosino...		Lus10024609 [exp]	13.4	0.9259
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	14.8	0.9280
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	18.5	0.9182
AT2G20030			RING/U-box superfamily protein...		Lus10009511 [exp]	18.8	0.8932
					Lus10003450 [exp]	20.3	0.8486
AT5G27730			Protein of unknown function (D...		Lus10022615 [exp]	21.4	0.9041
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021501 [exp]	26.7	0.8997

Compare expression of checked genes

Lus10008100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.