Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32570 145 / 7e-40 ZIM TIFY8 TIFY domain protein 8 (.1) AT3G17860 45 / 7e-05 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G70700 44 / 0.0001 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013138 [exp] 662 / 0 AT4G32570 152 / 2e-42 TIFY domain protein 8 (.1) Lus10013166 [exp] 45 / 6e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10008129 [exp] 42 / 0.0004 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10027648 [exp] 42 / 0.0005 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247500 [exp] 276 / 4e-89 AT4G32570 187 / 3e-55 TIFY domain protein 8 (.1) Potri.018G033700 [exp] 266 / 2e-85 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1) Potri.015G035800 [exp] 48 / 8e-06 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 48 / 9e-06 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 46 / 2e-05 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 45 / 4e-05 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10008101 pacid=23169778 polypeptide=Lus10008101 locus=Lus10008101.g ID=Lus10008101.BGIv1.0 annot-version=v1.0 ATGACGGTGGCGCTGGTGATGATGGCTCAGCAGAGTAAAGAAGCGAATGCGGCAATGTTCCATGATTTCTTGGGGATGAAGCCGGCGACGACCAGTAGTA ATAGTGTTAGAAACAATGATTCTTCCCCTGCAGCAGTTTTGGCTACTTCTAAAACCCACCCAGATGCATCTCCCTCTGCCGCCGCCGCCGGCTGCGGTCG TGGTGGTGGACCTCTTTCCACCGTCTCCGATCTTGCCTCTGAAAGACAGGCTGCAAATCATCTAGAGGGGATTCCATACTACGTACCAAGAACCAGCGAT GTTTCTACTCAGGAGATGAGCAACAGATTAGCTGGAAGCAAGAGAAGTAATTCAGATTCTGCACCAATTGGCCTTCATCATGACTCTGTTGAAAGCAGCA GCCTGCATTTGATGAAGATGCAGATGCCTAGAAGGTCTTTAGATGATGAGAGTTTCTTTGGTGCAAGGCCGAGTTCAGCTGCCTCACTTATATTGCAGCA ACCTTCAAGTGTTTCGAAATGGGAAAGATCTGTGCCTACAGTGCAGCATCCTTATCGTGGGAGTCACTACGTTCCCTTGCAGCAATTCAACAGTGCAAGC AGATTCGGGGGAGACACGACTGCTGGTGGACCGTCCGGTATCTCTCAGGCTGCTGCTGATGAAGGTTCAAGAACTGGCATCAAAGGACCTGGAATTTTGA GTTGCATTAACAAGTGTTTTGATGCCAGTAGTCAGGGCCTAGCGTCTGGAAGTCGACAGATGACCATATTCTATGGCGGTCAAGCACATGTTTTCGACGA TGTACACCCCAACAAGGCAGATGTGATAATGGCACTAGCTGGATCAAACGGGGGATCATGGTCGACGGCCTACTCACCGAAGCCAAGCAGTGGCAGCAGA CCAGGCGGTGGTGAAACTTCCACCCACTGCAGACCAGGCGGTGGTGAAACTTCCACCGTGGCGAGTGGAGAATACGAAGCAGGTGGTGGTGCAGCAGCAA GAAGCAACATAACGTTATTGCAACACGAGCTCCGTAGAAGGGTGCCAGTCGCCACGAATTCCATGGTCCCAGGCGTGCACTCTAGCGACCGGATCATACC CTCAACAGCTGTTCATCATGGTGGTGGTAAGGAGACAAGAAATCAAATGCAGAAGGCTGGAGATGGGAGTAGTACAGGTGAAGAAACAAGGGAGGTTTGA
AA sequence Show only first row Show all	>Lus10008101 pacid=23169778 polypeptide=Lus10008101 locus=Lus10008101.g ID=Lus10008101.BGIv1.0 annot-version=v1.0 MTVALVMMAQQSKEANAAMFHDFLGMKPATTSSNSVRNNDSSPAAVLATSKTHPDASPSAAAAGCGRGGGPLSTVSDLASERQAANHLEGIPYYVPRTSD VSTQEMSNRLAGSKRSNSDSAPIGLHHDSVESSSLHLMKMQMPRRSLDDESFFGARPSSAASLILQQPSSVSKWERSVPTVQHPYRGSHYVPLQQFNSAS RFGGDTTAGGPSGISQAAADEGSRTGIKGPGILSCINKCFDASSQGLASGSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTAYSPKPSSGSR PGGGETSTHCRPGGGETSTVASGEYEAGGGAAARSNITLLQHELRRRVPVATNSMVPGVHSSDRIIPSTAVHHGGGKETRNQMQKAGDGSSTGEETREV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	0	1
AT1G10380			Putative membrane lipoprotein ...		Lus10036906 [exp]	1.4	0.8412
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	2.0	0.8281
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	2.8	0.8509
AT3G63240			DNAse I-like superfamily prote...		Lus10042619 [exp]	4.4	0.7886
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	7.3	0.8209
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	7.5	0.8408
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	8.4	0.8185
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10013250 [exp]	9.5	0.7603
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	18.8	0.7877
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	19.4	0.7890

Compare expression of checked genes

Lus10008101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.