Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11310 597 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 187 / 4e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 185 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 181 / 7e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 180 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 180 / 1e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 174 / 4e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 157 / 5e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 156 / 9e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 154 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013139 [exp] 989 / 0 AT5G11310 598 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 208 / 1e-59 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 191 / 2e-52 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 188 / 3e-52 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011459 [exp] 184 / 8e-51 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 181 / 1e-49 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 176 / 6e-48 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 171 / 1e-45 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 167 / 3e-44 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247400 [exp] 776 / 0 AT5G11310 638 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 206 / 9e-59 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 201 / 3e-57 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 198 / 2e-56 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G066700 [exp] 195 / 1e-54 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 176 / 3e-48 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 176 / 8e-48 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 176 / 2e-47 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 168 / 2e-44 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 167 / 3e-44 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008102 pacid=23169763 polypeptide=Lus10008102 locus=Lus10008102.g ID=Lus10008102.BGIv1.0 annot-version=v1.0 ATGAAAGTTGCTCATTTCAGTCTGGATGCCACAAAGTTATTCGTCAACAATCGACGCCATCTTCACAGATTATTATCTCTCCCAGCTGGAAACCCCGCCG TCAAGCGGCGGCAACCTGCTCCGCCGCCGCAGTCATTGCCGACTCCTCATCGCTACCATCCAAATCCCAATCCTGAACCCAACTACTCGCAGCAGGATTT CTCCGTCCTCTGCAGTCTTCTCAGGGACTCCAATCTGTCCCCTGGTCCGTCCCTCGAAAATGCTCTGGAACAGACTGGAATCGAGCCGCAGCCAGCTCTG CTAGAGGCAATATTCGAGAACTTCGATTCGTCTCCCAAATTGCAGCACGCTTTGTTTCTATGGGCGGAGAAGAGACCTGGGTTTCAGTGTTCTGAGGTGC TTTTCAATTCAATGGTTAATTCACTTGGTAAAGCTAGAGAATTCGACTCTGCTTGGTTCCTTGTTCTTGATAGGCTTGCTGCAGATGACGATCGTTGTTT GGTTTCCAGTGATACTTTTGCTGTTCTGATCAGAAGGTACGCTCGGGCAGGAATACCTGATGCTGCAATTAGAACATATGAGTATGCGAAGAATCTGGAC TTGGTTAGCAAGTCGGATTCCGCAATCCGCTTGTTCGAGATTCTATTGGATTCCCTGTGCAAGGAAGAGCATGTTCGTGTTGCAGCACAATATTTCCAGA GCAGAAAGAAGATCGAACCGAGTTGGGTTCCAACTATTCGTGTCTATAACATACTGTTAAACGGGTGGTTCAGAACAAGAAAGCTTAAACATGCAGAAAG GCTCTGGTTCGAGATGAAGAAGGAGAAGAAGAATGTGAAACCAAGTGTCGTAACCTACGGTACCCTAGTAGAAGGGTACTGCAGGTTGCGACGAGTCGAG ATGGCACTCGATTTGGTGGATGAAATGAGAAAGGACGGAATCAAACCGAATTCCATCGTTTACAATCCGATCATCGATGCACTTGCAGAAGCTGGAAGGT TCAAGGAGGCTTCCGGGATGATGGAACACTTCTCACTCTGCGAATCAGGCCCTACTCTTTCTACGTATAATTCATTAGTAAAAGGGTATTGCAAAGCCGG AGATCTTGTCACAGCGAGTAAGATTCTTCGAATGATGATCGAGAGGGGGATTCTTCCGACTTGTACAACGTATAACTACTTCTTCAGGCATTTTTCAAGA TTCGGAAAGATTGATGATGCGATGAACTTATATAACAAAATGATCGAATCCGGATACGCTCCTGATAATCTCACTTACAATCTTTTGTTAAAGATGCTGT GTGAAGAGGAAAGGCTAGACTTGGCTTTTCAGATTAGTAAAGAGATGGAAGTGAAAGGGCGCGATATGGACTTAGCTACTGGCACGATGCTGACACATTT GCAGTGTAAGATGCACCGATTCGAGGAGGCGTTTGTAGAGTTTGAGAAGATGGTGAGGAGGGGTTTGGTTCCTCAGTACCTTACTTTCAAAAGATTGGAT GACGAGTTGAGCAAGCGAGGAATGATTAAGATGTCGCGGAAACTGAGGGATATGATGTCGTCGGTGCCCCATTCGACGAAATTACCAGATAATTACAATC CTGAAAAGGACACATTGCGGCATGCAAGGAGGAAATCTATTCTGCAGAAGGCAGAAGCTATGTCTGAGGTGCTAAAGACGTGTAATGATCCAAGAGAACT TGTTAAGGTTAGAGGTTCGCCTTGTAATCCTCTGTCGAGTGCAGATCAGCTGATCATGGATATCAAAGAAAGATCAAACTTGATGATAAATAATGATCAA TATTCCGAGACATTCTCAACTGCGGAAGAGAGATTCAACTCGTGA
AA sequence Show only first row Show all	>Lus10008102 pacid=23169763 polypeptide=Lus10008102 locus=Lus10008102.g ID=Lus10008102.BGIv1.0 annot-version=v1.0 MKVAHFSLDATKLFVNNRRHLHRLLSLPAGNPAVKRRQPAPPPQSLPTPHRYHPNPNPEPNYSQQDFSVLCSLLRDSNLSPGPSLENALEQTGIEPQPAL LEAIFENFDSSPKLQHALFLWAEKRPGFQCSEVLFNSMVNSLGKAREFDSAWFLVLDRLAADDDRCLVSSDTFAVLIRRYARAGIPDAAIRTYEYAKNLD LVSKSDSAIRLFEILLDSLCKEEHVRVAAQYFQSRKKIEPSWVPTIRVYNILLNGWFRTRKLKHAERLWFEMKKEKKNVKPSVVTYGTLVEGYCRLRRVE MALDLVDEMRKDGIKPNSIVYNPIIDALAEAGRFKEASGMMEHFSLCESGPTLSTYNSLVKGYCKAGDLVTASKILRMMIERGILPTCTTYNYFFRHFSR FGKIDDAMNLYNKMIESGYAPDNLTYNLLLKMLCEEERLDLAFQISKEMEVKGRDMDLATGTMLTHLQCKMHRFEEAFVEFEKMVRRGLVPQYLTFKRLD DELSKRGMIKMSRKLRDMMSSVPHSTKLPDNYNPEKDTLRHARRKSILQKAEAMSEVLKTCNDPRELVKVRGSPCNPLSSADQLIMDIKERSNLMINNDQ YSETFSTAEERFNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10008102 [exp]	0	1
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	13.3	0.8376
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	18.3	0.8298
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	27.8	0.8291
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	29.4	0.8259
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	34.5	0.8204
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	36.7	0.8280
					Lus10012794 [exp]	38.4	0.8124
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	46.1	0.8203
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	46.6	0.8193
AT5G36930			Disease resistance protein (TI...		Lus10023272 [exp]	47.5	0.8074

Compare expression of checked genes

Lus10008102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.