Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11300 436 / 1e-150 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT5G25380 427 / 6e-147 CYCA2;1 cyclin a2;1 (.1) AT1G15570 399 / 7e-136 CYCA2;3 CYCLIN A2;3 (.1) AT1G80370 379 / 9e-128 CYCA2;4 Cyclin A2;4 (.1) AT1G44110 313 / 6e-102 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 297 / 4e-96 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT5G43080 282 / 2e-91 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 273 / 9e-88 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47230 263 / 7e-84 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47220 248 / 2e-78 CYCA3;3 Cyclin A3;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028544 [exp] 305 / 9e-100 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10013140 [exp] 300 / 1e-99 AT5G25380 244 / 1e-78 cyclin a2;1 (.1) Lus10029700 [exp] 301 / 8e-98 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10042739 [exp] 298 / 4e-95 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10014199 [exp] 287 / 6e-93 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10018715 [exp] 274 / 1e-87 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10024822 [exp] 271 / 3e-86 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10013886 [exp] 212 / 5e-64 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10030746 [exp] 195 / 3e-57 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034100 [exp] 546 / 0 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.006G247200 [exp] 537 / 0 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 439 / 4e-151 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 421 / 1e-143 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.002G080000 [exp] 302 / 2e-97 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.014G021100 [exp] 297 / 4e-97 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.005G181400 [exp] 298 / 5e-96 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.002G121500 [exp] 291 / 9e-95 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.009G093100 [exp] 246 / 5e-77 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G010000 [exp] 199 / 2e-58 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008103 pacid=23169759 polypeptide=Lus10008103 locus=Lus10008103.g ID=Lus10008103.BGIv1.0 annot-version=v1.0 ATGGACAAGGAGAACATAAATGGCTCAGAAGGTCAGGAACCGGGTGTTCGGATTACCCGTGCACGTGCCAGAGCTCTTGGGGTCTCCGGAGCTGCAAAAA CCTCCATTAATCAGGATCAGAGGGGTGTTCTCAAAGTAAGTACAAAAAGACAAGCATCAGAAGAGAACAAAGCTTCTGGAGTGGGGGCTGCTGGAGCTCA GTGCAAAAAGAGGGCAGTGCTAAAAGAGGTGACTAATACCTTAACTGAGGGTTCATACGCTAGCAGCATCAATGCAACCAAAGCTCAGACGACCAAGCAG GCCAAAAGATGCCCACCAAGTAAAAGTTCCAAGGTGACTAATCTTCCGCCGAGAGCTCCAAAGGTAGAACAAGAGAACTTGAATACAAAGCTGGTGGAGG GACGGTCAAAGGTGATGATGGCAGAAGCTCAAGAGATTGTTCAGAGAGGAAACTTGAACGAAAAACAACCATGCCGGGTTGTTCCTGCTCGAGTGAAGCA CAATGCAACAAATGGAGTCTTTCCAGCGTTTCATTCTACCAAAGGAGACTGCATCATCTATCAGAAACAAGATGCCTTGGATAAGCTCGGCATAAAGGAT ATCGATACTGATTTGAAAGATCCACTAATCTGCAGTCTATATGCCCCCGATATCTACAAACATATACGTGTTACAGAGCTTAACCAGAGGCCTTCGGCTG ATTACATGGAGAACTTACAGTGTGATGTCACTCCGAACATGAGGGGAATACTAATCGACTGGCTTGTAGAGGTTTCTGAGGAATATAAGCTCGTTCCTGA TACCCTTTACTTGACCGTGAATCTCATTGACCGATATCTCTCCAAAAACTACATTGAGAAACAAAGACTCCAACTACTTGGTGTGACATGCATGCTAATT GCGTCAAAGTATGAAGAAATTTGTGCTCCACGGGTTGAGGAGTTCTGCTTCATTACTGACAATACGTACACAAAAGAAGAGGTATTGGAAATGGAGAGAC GAGTTCTCAACTTATTGCACTTCCAATTATCAGTTCCCACCCCGAAGATGCTTCTGAGGAGATTCATTCAAGCTGCACAGTCTTCTTACAAGGATCCTTG TGTTGAACTGGAGCTTTTGGCAAATTATCTAGCGGAGTTGACTCTTGTTGAATATAACTTTATAAAGATCTTACCTTCCTTGGTTGCTGCATCTGCCGTG TTTCTCGCTCGATGGACACTTAATCAGTCGGATAATCCCTGGAATCCAACTCTAGAACATTACACTAATTACAAGGCTCCTGAACTAAAAAGTACAGTAC TCGCGCTCGAAGATCTGCAGCTCAACACTACTAGTTGTCCCCTAAATGCCATACGCGAAAAGTACAGACATCAGAAGTTCAAGAGTGTGGCGAATTTGAC ATCTCCGGAACGCGTCCAATCGTTGTTCGAACGATGA
AA sequence Show only first row Show all	>Lus10008103 pacid=23169759 polypeptide=Lus10008103 locus=Lus10008103.g ID=Lus10008103.BGIv1.0 annot-version=v1.0 MDKENINGSEGQEPGVRITRARARALGVSGAAKTSINQDQRGVLKVSTKRQASEENKASGVGAAGAQCKKRAVLKEVTNTLTEGSYASSINATKAQTTKQ AKRCPPSKSSKVTNLPPRAPKVEQENLNTKLVEGRSKVMMAEAQEIVQRGNLNEKQPCRVVPARVKHNATNGVFPAFHSTKGDCIIYQKQDALDKLGIKD IDTDLKDPLICSLYAPDIYKHIRVTELNQRPSADYMENLQCDVTPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRYLSKNYIEKQRLQLLGVTCMLI ASKYEEICAPRVEEFCFITDNTYTKEEVLEMERRVLNLLHFQLSVPTPKMLLRRFIQAAQSSYKDPCVELELLANYLAELTLVEYNFIKILPSLVAASAV FLARWTLNQSDNPWNPTLEHYTNYKAPELKSTVLALEDLQLNTTSCPLNAIREKYRHQKFKSVANLTSPERVQSLFER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	0	1
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	1.0	0.9681
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10003236 [exp]	1.4	0.9662
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10009836 [exp]	1.7	0.9523
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	2.0	0.9489
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	3.6	0.9377
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	4.9	0.9440
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	5.5	0.9422
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	5.5	0.9482
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	8.5	0.9475
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	9.2	0.9368

Compare expression of checked genes

Lus10008103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.