Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25510 723 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 547 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 546 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 545 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 541 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G09880 511 / 7e-180 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 501 / 2e-176 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 475 / 4e-166 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G54930 456 / 1e-158 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013141 [exp] 865 / 0 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10017752 [exp] 580 / 0 AT5G25510 628 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10030002 [exp] 572 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 568 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 555 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10010426 [exp] 554 / 0 AT5G25510 608 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10032082 [exp] 550 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10012116 [exp] 528 / 0 AT5G25510 598 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10031536 [exp] 523 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034200 [exp] 768 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 768 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G073925 [exp] 585 / 0 AT5G25510 609 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 565 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.017G070100 [exp] 554 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.002G226200 [exp] 551 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 546 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 542 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 538 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 536 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10008104 pacid=23169765 polypeptide=Lus10008104 locus=Lus10008104.g ID=Lus10008104.BGIv1.0 annot-version=v1.0 ATGAATCTATTTGTTAGCAAAGTAAGTTTGTGCTGTGTGACTTTCGATTTCTCTGATCCGACTAAGGATACTCTTGAGAAGGATGTAAAGCGGCAGACTT TGCTCGAGCTTGTGGATTTCGTGGCTTCTGGTTCGATGAGGTTTACCGAGCCGGCGATTTTAGCTATGTGTAGAATGTGTGCTTTTAACTTGTTTAGGGT TTTCCCTCCGAGCTATAGGTCCAATGGTGTTAGTGAGAATGAAGATAGTGATGAGCCAATGTTTGATCCTGCATGGCCGCATTTGCACATTGTCTACGAT TTGTTGCTTAGGTTCATCACTTCGACTTGCTTGGATGCCAAAATAGCCAAGAAGTATATAGACCATTCGTTCGTGTTGAGACTGCTCGATTTGTTCGAAT CCGAGGATCCGAGGGAGAGGGAGTGTTTGAAGACTATACTCCACAGGGTGTACGGAAAATTCATGGTGCATAGGCCGTTTATTCGGAAGTCGATCAGCAA TATATTCTACCGGTTCGTGTTTGAAACCGAGAAGCATAACGGGATTGCTGAGCTGCTGGAGATGTTTGGGAGTATAATTAGCGGATTCGCTTTGCCTCTG AAGGAAGAGCATAAGATTTTCTTATGGAGGGTTTTGATTCCGATGCATAAGCCGAAGTCTGTTGGGGTTTACTTTCAGCAGCTGTCGTTTTGTATAACGC AGTTTATCGAGAAGGATCCAAAACTGGCTAGCTTGGTGGTGAAACGGATGTTGAAGTACTGGCCTGTGACGAATAGCCAGAAAGAGATTATGTTTCTGGG AGAGGTGGAAGAGATTTTGGAAAGTATTAATATGGTTGAGTTCCAGAAAGTTATGATTCCTTTGTTTTGGCGGATTGGCTGCTGCATGAACAGTTCCCAT TTCCAGGTGGCGGAACGTTCCCTGTTCCTATGGAACAACGACCAAATCGTCAACTTGATCGCGCACAACCGCAACGTGATTCTGCCGATCATATTTCCAG CACTAGAGAAGAACGCTCACAGCCACTGGAACCAAGGAGTGCTGAATCTAACCCTCAACATCCGCAAAATGTTCTCCGAGATGGACGAACAGCTCTTCCT CTCGTGCCTCGCCCAGTTTAAGGACGACGAAGAACAGCTGAGCCTCGCCGCCGAGAAGAGGAACGAAGCGTGGCGACGCCTCGAGAACGCAGCGAGTCTG AAACCGATAACCGGAAACACCGCCGTTCTCGTAGCCCCTCTGGCGAAGAAAATCGCCTGTTGA
AA sequence Show only first row Show all	>Lus10008104 pacid=23169765 polypeptide=Lus10008104 locus=Lus10008104.g ID=Lus10008104.BGIv1.0 annot-version=v1.0 MNLFVSKVSLCCVTFDFSDPTKDTLEKDVKRQTLLELVDFVASGSMRFTEPAILAMCRMCAFNLFRVFPPSYRSNGVSENEDSDEPMFDPAWPHLHIVYD LLLRFITSTCLDAKIAKKYIDHSFVLRLLDLFESEDPRERECLKTILHRVYGKFMVHRPFIRKSISNIFYRFVFETEKHNGIAELLEMFGSIISGFALPL KEEHKIFLWRVLIPMHKPKSVGVYFQQLSFCITQFIEKDPKLASLVVKRMLKYWPVTNSQKEIMFLGEVEEILESINMVEFQKVMIPLFWRIGCCMNSSH FQVAERSLFLWNNDQIVNLIAHNRNVILPIIFPALEKNAHSHWNQGVLNLTLNIRKMFSEMDEQLFLSCLAQFKDDEEQLSLAAEKRNEAWRRLENAASL KPITGNTAVLVAPLAKKIAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	0	1
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	1.0	0.9765
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	2.0	0.9194
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	2.4	0.9077
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	2.8	0.8999
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	3.2	0.8927
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	4.2	0.8923
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	5.3	0.8889
AT3G51650			unknown protein		Lus10009097 [exp]	6.6	0.8419
AT2G40815			Calcium-dependent lipid-bindin...		Lus10030501 [exp]	7.7	0.8475
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	8.1	0.8513

Compare expression of checked genes

Lus10008104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.