Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16130 409 / 8e-133 WAKL2 wall associated kinase-like 2 (.1) AT1G16120 406 / 4e-132 WAKL1 wall associated kinase-like 1 (.1) AT1G69730 405 / 5e-131 Wall-associated kinase family protein (.1) AT1G79670 398 / 5e-129 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16150 398 / 2e-128 WAKL4 wall associated kinase-like 4 (.1) AT1G16160 396 / 2e-128 WAKL5 wall associated kinase-like 5 (.1) AT1G79680 387 / 2e-124 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G21210 379 / 2e-121 WAK4 wall associated kinase 4 (.1) AT1G21230 378 / 4e-121 WAK5 wall associated kinase 5 (.1) AT1G21240 377 / 6e-121 WAK3 wall associated kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004504 [exp] 1042 / 0 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10013143 [exp] 488 / 4e-170 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10034085 [exp] 382 / 2e-123 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 366 / 5e-117 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 332 / 1e-103 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10008586 [exp] 319 / 5e-99 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10013385 [exp] 300 / 1e-91 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 290 / 3e-87 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 289 / 4e-87 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148432 [exp] 427 / 3e-140 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.018G148300 [exp] 424 / 2e-139 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.018G148498 [exp] 412 / 3e-136 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.001G038525 [exp] 415 / 1e-135 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040756 [exp] 403 / 1e-135 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.001G039200 [exp] 416 / 2e-135 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 415 / 2e-135 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.018G148564 [exp] 414 / 2e-135 AT1G79680 505 / 2e-169 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.001G040500 [exp] 413 / 7e-135 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.002G075901 [exp] 405 / 9e-135 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10008105 pacid=23169786 polypeptide=Lus10008105 locus=Lus10008105.g ID=Lus10008105.BGIv1.0 annot-version=v1.0 ATGGTGGCTGCTTCAGTGCCTGCAACTTCGTTTCTGCTGAGGAACTCTCACTTCAAGGAATGTTGTTTGCTCCAAGTGCAGAGAGTTATGAATATGCCTA CCATGCCTAATACTAAATCCCTGCGCAGGGAAGTGCAAGACTACATCAACAACACTCAGTTGGCATGCGACTCACCAGACTCGCCATCCATAGCGAAAGG CTACATCTGCAATGGAATCCGGACCGGCGAATGCCAGTACTTCACGACTTTCCAATCCGTCCCGCCAAACTTCGAAACCCCTATCTCGATCGCCAATCTT TTGGGTTCGGATCCTTCGGTAGTAGCTTCGATAAACAACATCTCATCCACAACGGACAAAATCCCGCCTGGCGAATGGATCATAGTACCGGTTTCCTGTT CTTGTTCTGGGAGCATTTACCAGCACAACACTCTTTACACCGTCAGGATGAATGACAAGACCTACTTCTCCATCGCTAACAACACCTTCCAGGGCTTGAC GACTTGTCAGGCCCTGGCGGGCCAGAACTACTATGCCTTTGACAATCTTCAGGTCGGCACTGAGCTGACTGTTCCGTTGAGGTGCGCCTGTCCGAGTCAG GATCAGGCCGCCAATAGCGGTGTTGCGTCCTTGTTGGGGTACATGGTCACGTGGGGCGATTCGATTTCTTCGATCGCGGCTCGGTTTGGGGTCCACTATG CCAGGATCTTGGAGGCTAATAGATTGGGGAATGATAGTATGATCTTCCCGTTCAGTCAGCTTTTGGTGCCTCTTGATGCCGAGAGTTGTAAGGCTAATCC TGACAGGTTCTTCTGCGGTTGTCGTGTCAATCCTGGAATCTGCATTTCCGACGGGAAAAAGTTTCCTGTCAAGTTGGTCACGCTACTAGGAATTGGCATT GGAATCGGACTCCTGGCCTCATTCCTAACACTCTACAAGCTGACTCACTACCTAAAGAGAAGAAAGAAACGAATTCACAAACAAAAGATGTTCAAGCAAA ATGGCGGCATTTTATTACAACAAACACTTACTTCATACCAAGGAAGCCACGAAAATGCAAAGCTGTTCACAGAAGAAGAACTCAAAAGAGCTACAGACAA CTACAACCAAAGCCGGTTTCTCGGCCAGGGAGGGTTCGGAACCGTGTACAAAGGAATGCTACCGGATGGAACGATCGTGGCCGTCAAGAAATCCAAGACC ATCGACAAGACACAGATCCAGCAGTTCATAAACGAGGTTGTCATTCTGTCTCAGATTAACCATAGGCACATTGTGAAGCTTCTAGGGTGCTGTCTGGAGA CCGAATTTCCGTTGTTGGTGTACGAGTTTATCCCCAACGGAACGCTTTCGAGTCACATCCACGACTCGGTTAAAGACGAAGAAGAATCGAGTTCGAGTGG GATGCTTTCTTGGGCGGACCGGTTCAGGATAGCGGGGGAAGTTGCGGGAGCTGTCGCTTACATGCACTCTGCAGCTTCGTTCCCGGTGTTCCACCGTGAC ATAAAATCTTCGAATATACTGTTGGATGCCAAGCTGAGTGCCAAAGTTTCGGACTTTGGTACTTCCAAGTCTGTCCCTGATGACAAAACTCACCTTACCA CCATGGTTCAGGGCACATTCGGGTACTTGGATCCGGAGTACTTCCACACAAGCCAGTTCACAGACAAGAGCGATGTCTACAGCTTTGGAGTCGTGCTGGT AGAGCTTCTCACAGGGCAGAAGCCCATATCCTTCACCAGAGGCGAAGAGGAGCGGAGCCTCGTAGCGCATTTCATCTCCGCAACGAAGGAGGAGGGCGGT CTAGCCAGGATTTTGGACCCTGTAGTTTTTAGAGAAGGTAGAGAAGCTGATTTGGAGGCCATTGCTGAACTGGCCCAGAGATGTTTGAGGTTGAATGGGA AGAAGAGGCCTACAATGAGAGAGGTGGCTATGGAGCTCGATGGGTTGCGAAACTCGGGGCTCTCCCTTCGAGTTGATGATCAAGAAGATGAAGCATACAT GGAGGATAGCTTTGACGTCTCTATAGAGATGGAATCCGTGTGA
AA sequence Show only first row Show all	>Lus10008105 pacid=23169786 polypeptide=Lus10008105 locus=Lus10008105.g ID=Lus10008105.BGIv1.0 annot-version=v1.0 MVAASVPATSFLLRNSHFKECCLLQVQRVMNMPTMPNTKSLRREVQDYINNTQLACDSPDSPSIAKGYICNGIRTGECQYFTTFQSVPPNFETPISIANL LGSDPSVVASINNISSTTDKIPPGEWIIVPVSCSCSGSIYQHNTLYTVRMNDKTYFSIANNTFQGLTTCQALAGQNYYAFDNLQVGTELTVPLRCACPSQ DQAANSGVASLLGYMVTWGDSISSIAARFGVHYARILEANRLGNDSMIFPFSQLLVPLDAESCKANPDRFFCGCRVNPGICISDGKKFPVKLVTLLGIGI GIGLLASFLTLYKLTHYLKRRKKRIHKQKMFKQNGGILLQQTLTSYQGSHENAKLFTEEELKRATDNYNQSRFLGQGGFGTVYKGMLPDGTIVAVKKSKT IDKTQIQQFINEVVILSQINHRHIVKLLGCCLETEFPLLVYEFIPNGTLSSHIHDSVKDEEESSSSGMLSWADRFRIAGEVAGAVAYMHSAASFPVFHRD IKSSNILLDAKLSAKVSDFGTSKSVPDDKTHLTTMVQGTFGYLDPEYFHTSQFTDKSDVYSFGVVLVELLTGQKPISFTRGEEERSLVAHFISATKEEGG LARILDPVVFREGREADLEAIAELAQRCLRLNGKKRPTMREVAMELDGLRNSGLSLRVDDQEDEAYMEDSFDVSIEMESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	0	1
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	2.6	0.9877
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	4.0	0.9862
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	4.9	0.9854
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	5.9	0.9848
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	6.0	0.9841
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	6.5	0.9847
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	6.6	0.9741
AT1G20925			Auxin efflux carrier family pr...		Lus10016046 [exp]	6.9	0.9788
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10023207 [exp]	7.7	0.9839
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	8.5	0.9857

Compare expression of checked genes

Lus10008105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.