Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32600 373 / 4e-127 RING/U-box superfamily protein (.1) AT1G80400 328 / 5e-110 RING/U-box superfamily protein (.1) AT4G26580 130 / 7e-35 RING/U-box superfamily protein (.1.2) AT5G55970 128 / 7e-34 RING/U-box superfamily protein (.1.2) AT1G12760 124 / 4e-32 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT4G11680 124 / 7e-32 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G63170 120 / 2e-30 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G61180 118 / 7e-30 RING/U-box superfamily protein (.1) AT1G68070 111 / 1e-27 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 111 / 1e-27 RIE1 RING-finger protein for embryogenesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013144 [exp] 553 / 0 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10011475 [exp] 344 / 4e-116 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 332 / 3e-111 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10033075 [exp] 165 / 6e-48 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10017750 [exp] 160 / 3e-46 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10022567 [exp] 134 / 9e-36 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 111 / 3e-27 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 106 / 2e-25 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10034587 [exp] 106 / 9e-25 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034400 [exp] 439 / 3e-153 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 419 / 2e-145 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 132 / 2e-35 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 128 / 9e-34 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.008G134900 [exp] 126 / 4e-33 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.014G075000 [exp] 122 / 2e-31 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.002G155200 [exp] 122 / 2e-31 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 117 / 3e-29 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 104 / 7e-25 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G072700 [exp] 72 / 7e-14 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008106 pacid=23169784 polypeptide=Lus10008106 locus=Lus10008106.g ID=Lus10008106.BGIv1.0 annot-version=v1.0 ATGGAGAGATCAGAGACGTTTCGGAGTACCGATCACATAATCGACGTACCAAGAAGTGTAGATTCATCGTCTTCTGAATCAACAACCTCTCAAGGTAGAG GTTCTGATGGTCTAGAAAGTTTCTCAACAGTTGGCCGGACTTCTTCAAGTACTTCAACAACCCCCATTTCTCAACCTTCCACATCTTCATCTTCATCTAA TGCTCGGAATGCTAGTTTCACAAGGAGGGGGGAAAATCGTAGACGAAGGAGTCCATTGAACTCCGGTCTATGGATATCCGTTGAATTAGCCCTCACGTTG AGTCAGATTATTGCATCGATCGTCGTTTTGTGCTTGTCAAGGGACGAGCACCCTCGTACACCTTTGCTTGTGTGGATTATTGGTTATGCATCTGGATGTT TAGCAACTCTCCCACTTCTTTACTGGCGATATTATCATCGAAATCAGGGGTTGGACCAAGATGCAGCTCAAACTCGCCAAGGCTCTACGCATATCAATGT TCCTGCTGGACCGTTTTCTCTCTCGGTGAGCCGGACTTCCGATGGAGAAGATCGTCGGCCCGCTGTAGCTGCATCTAGTGATGGTCATAATACCGCTACA GTACATCCCAGGTACCCTTTGATCAGAAGATACCCTCTTTGGTTCGTTGTGGGTAATGTGTGGATCTTCGGAGGTCACTCATCAGCAAGTGATGCTCCAA ACATGTATAGCTGTATCGGATACGCCATGCCCTTCATTCTGTGCGCCACAATCTGCTGCTGCCTGCCTTGCATCATTTCCATTCTCGGGTTTCGAGAGGA TCAGACACAAACCAGAGGAGCCACACCGGAGTCCATCGATGCATTACCGACTTTCAAATTCAAGTCGAAGAAAGCTAGGAACGATAGAAACCTCGGGACG AACGATGGCGGGGTTGTGGCTGCTGGGACAGAAAAGGAACGTGCCATCTCTGGTGAAGACGCGGTCTGCTGCATTTGTTTGGGGAAGTATGCGAACAACG ACGAGCTGAGAGAGCTTCCGTGCGCTCACTTCTTTCACAAAGACTGCGTAGACAAGTGGCTTAAGATCAATGCAACTTGTCCTCTGTGCAAGAGTGATGT CGGAGAAAGCATCACAGGTTCGCTCTCGGCCTAG
AA sequence Show only first row Show all	>Lus10008106 pacid=23169784 polypeptide=Lus10008106 locus=Lus10008106.g ID=Lus10008106.BGIv1.0 annot-version=v1.0 MERSETFRSTDHIIDVPRSVDSSSSESTTSQGRGSDGLESFSTVGRTSSSTSTTPISQPSTSSSSSNARNASFTRRGENRRRRSPLNSGLWISVELALTL SQIIASIVVLCLSRDEHPRTPLLVWIIGYASGCLATLPLLYWRYYHRNQGLDQDAAQTRQGSTHINVPAGPFSLSVSRTSDGEDRRPAVAASSDGHNTAT VHPRYPLIRRYPLWFVVGNVWIFGGHSSASDAPNMYSCIGYAMPFILCATICCCLPCIISILGFREDQTQTRGATPESIDALPTFKFKSKKARNDRNLGT NDGGVVAAGTEKERAISGEDAVCCICLGKYANNDELRELPCAHFFHKDCVDKWLKINATCPLCKSDVGESITGSLSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32600			RING/U-box superfamily protein...		Lus10008106 [exp]	0	1
AT1G08315			ARM repeat superfamily protein...		Lus10026170 [exp]	8.4	0.8026
AT1G03290			unknown protein		Lus10012382 [exp]	13.0	0.8318
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	22.2	0.7957
AT3G54680			proteophosphoglycan-related (....		Lus10017694 [exp]	22.4	0.7602
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	25.1	0.7645
AT3G61800			unknown protein		Lus10030247 [exp]	27.1	0.7369
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10029341 [exp]	30.8	0.7445
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	33.8	0.7721
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10014060 [exp]	40.8	0.7477
AT4G25030			unknown protein		Lus10033276 [exp]	50.5	0.7312

Compare expression of checked genes

Lus10008106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.