Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16195 99 / 1e-26 Plant self-incompatibility protein S1 family (.1) AT1G04645 91 / 3e-24 Plant self-incompatibility protein S1 family (.1) AT5G12070 87 / 3e-22 Plant self-incompatibility protein S1 family (.1) AT3G16970 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) AT5G12060 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) AT4G24975 81 / 4e-20 Plant self-incompatibility protein S1 family (.1) AT3G17080 78 / 6e-19 Plant self-incompatibility protein S1 family (.1) AT1G26799 77 / 1e-18 Plant self-incompatibility protein S1 family (.1) AT4G24974 76 / 2e-18 Plant self-incompatibility protein S1 family (.1) AT1G26796 74 / 2e-17 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013145 [exp] 266 / 2e-93 AT4G16195 88 / 8e-23 Plant self-incompatibility protein S1 family (.1) Lus10017929 [exp] 145 / 7e-46 AT4G16195 71 / 1e-16 Plant self-incompatibility protein S1 family (.1) Lus10030964 [exp] 119 / 7e-35 AT5G12060 102 / 2e-28 Plant self-incompatibility protein S1 family (.1) Lus10011068 [exp] 112 / 1e-32 AT4G16195 103 / 5e-29 Plant self-incompatibility protein S1 family (.1) Lus10030965 [exp] 110 / 9e-32 AT3G16970 89 / 2e-23 Plant self-incompatibility protein S1 family (.1) Lus10011069 [exp] 92 / 2e-24 AT4G16195 89 / 2e-23 Plant self-incompatibility protein S1 family (.1) Lus10000480 [exp] 88 / 2e-23 AT5G12060 84 / 7e-22 Plant self-incompatibility protein S1 family (.1) Lus10030565 [exp] 83 / 8e-21 AT3G16970 91 / 7e-24 Plant self-incompatibility protein S1 family (.1) Lus10011753 [exp] 77 / 7e-18 AT3G16970 90 / 1e-22 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148630 [exp] 100 / 2e-27 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.018G148700 [exp] 97 / 5e-26 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 93 / 5e-25 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 76 / 3e-18 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.017G144361 [exp] 74 / 2e-17 AT4G24975 110 / 1e-31 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 63 / 2e-13 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 53 / 2e-09 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 50 / 4e-08 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 49 / 7e-08 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.001G053100 [exp] 49 / 8e-08 AT3G24060 171 / 2e-55 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10008107 pacid=23169777 polypeptide=Lus10008107 locus=Lus10008107.g ID=Lus10008107.BGIv1.0 annot-version=v1.0 ATGAAGTGCCCAATTGTGATCGTTACAATATTCATGGTGGCCGCAATGGTCGCCACGAACGACGTTGTTAAAGCCGATGATGACCACAGTCCTCGAGTTA CCGCGTTACAGGCGGTTAAAGTGATAGTTACAAACATGTTAGAAGACAGTTCTGCTGAGTTGACGTTACATTGCAAGTCGAAGGACGACGACCTCGGAGT TCAAGTGGTAGGGTACGGGCAGGAGTTTGATTTCAAGTTCGGGTTGAACTTTTTGGAATCGACTCAATACTTTTGTTCTTTTGAATGGCCTAACAGCGGT GGGGTCCATTGGTTCGATATCTACATTGCCAAAAGAGACGAGTATCGATGTACCGTGTGTAAATGGACCGTCGACTCGCGAGGGCCTTGTTTTTATAATG CAAAGAGCGATTTGTATGATATATGTTATCCGTGGAACACAAAATGA
AA sequence Show only first row Show all	>Lus10008107 pacid=23169777 polypeptide=Lus10008107 locus=Lus10008107.g ID=Lus10008107.BGIv1.0 annot-version=v1.0 MKCPIVIVTIFMVAAMVATNDVVKADDDHSPRVTALQAVKVIVTNMLEDSSAELTLHCKSKDDDLGVQVVGYGQEFDFKFGLNFLESTQYFCSFEWPNSG GVHWFDIYIAKRDEYRCTVCKWTVDSRGPCFYNAKSDLYDICYPWNTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16195			Plant self-incompatibility pro...		Lus10008107 [exp]	0	1
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	6.1	0.9648
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	6.9	0.9637
					Lus10032468 [exp]	8.1	0.9582
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10000659 [exp]	8.9	0.8999
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	10.2	0.9601
AT5G60330			unknown protein		Lus10018274 [exp]	11.2	0.9607
					Lus10002570 [exp]	11.4	0.9470
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	12.2	0.9413
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	13.0	0.9561
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	16.1	0.9577

Compare expression of checked genes

Lus10008107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.