Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11430 535 / 4e-176 SPOC domain / Transcription elongation factor S-II protein (.1) AT5G25520 526 / 5e-171 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G25640 484 / 4e-158 SPOC domain / Transcription elongation factor S-II protein (.1) AT3G29639 84 / 4e-18 unknown protein AT2G38560 61 / 3e-09 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT4G18720 58 / 1e-08 Transcription factor IIS protein (.1) AT2G42730 59 / 2e-08 F-box family protein (.1.2) AT5G42325 49 / 7e-06 Transcription factor IIS protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013146 [exp] 1594 / 0 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10025131 [exp] 65 / 1e-10 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 63 / 6e-10 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 60 / 4e-09 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 60 / 4e-09 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 50 / 5e-06 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 47 / 3e-05 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246800 [exp] 758 / 0 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.018G034500 [exp] 731 / 0 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.T125307 [exp] 137 / 4e-33 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.018G125500 [exp] 137 / 4e-33 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.016G138100 [exp] 61 / 1e-09 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 61 / 2e-09 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0616 [flax] [poplar] SPOC PF07744 [flax] [poplar] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Lus10008108 pacid=23169781 polypeptide=Lus10008108 locus=Lus10008108.g ID=Lus10008108.BGIv1.0 annot-version=v1.0 ATGAGTCAGCTGGAACACATATCAGAGAAATTGGACTCTTCTTCCCAAATGGGGTTTGGTTTAGATGTGGGATTACATGATCCGGCAATGCAACTGGTAT CGACCCCCAGTACACATATGGGAGTGATGGGTTCAGTTTCCAGCAACGCAGTATCACAACCGGCATCAATGCAAATGATGGAGCCTGTTATTTCGCCTCG TCTTCTGCAGCAATCATCAATGTCTAACTTCCAGACGAGAAATATCGATCCATTTTCCTATAATATGACATCGGAGAACTTTTTGATGCCTAATAATCAA TTCAGTGGCATTGGGTCCGCGTTGCAGGGTCAGCAGGCTGCTACAAACAAGAGAAAGGCACCAATGGAAGGTGCATCTCCGAACCCGGTGCCTGAGAGAT ATACAGCTCCAAAGCGGTTTTCTCTCAATGAACATAGGCCATGGCTTCAGCCGACGCCAGTAACAAGTAAATTACCTGTCCAGGTGCAGTCTATATCGCC TCGGCCACAAGGACCTCCTAAGAAACCGGCTCCTGCGAAAACCGGTACACAATATATGCCTTTGAAAAAAAATCAAACTGGTCAAATGCAACTGTCCCAG AAAGTGAAGAACGATTCGTTTGATTCTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGCTGCTTTAGCTCTTGTACAAGATAAGAGCCCAGATGGTCTGA AAGACTCCAAGAGTACTACTACTATAGGTGCTTCGGAGCCACCTTCTAGTGCTAATGATAACAGTGGTTCTTCAGAACTGATGGATTCATTGCCTGGAGC TGATTTCGCTGGAGATGCAGTCTTAACACACAATCCGAAGAAAAATGTACAAGGAGAGCAACCTCTGGAGACTGTTAGTATTGATGATATTCCTTTTAGT GAGAACTTTTATGTGAAAGATGAACTTCTTCAGGGTAATGGTCTGTCATGGGTTATAGATTCTGAGCTGGAATTAATAGATGAAAGTGGCATCGGGAAGA AGCAGTTGGACCAAGGTGATATCCCTGCTGTAGAAAAGAAGCAACTTCTGAACCCTGAAATTTTGGCAACGAAGATCGAAGCTGAACTATTCAAGTTATT TAGAGGGGTGAACAAGAAATACAAAGAAAAAGGAAGGTCTCTTCTGTTTAATTTAAAGGATCGTAATAACCCGGAGTTGAGAGAAAAAGTCATGCAGGGA GACATATCTCCTGAGAGGCTGTGCTCCATGACTGCGGAGGAGCTTGCTTCGAAGGAGCTCTCAGAATGGCGAGTGGCGAAAGCAGAGGAGTTCGCCCAAA TGGTTGTTTTGCCAGATTCAGATGTGGATATCAGGAAACTCGTGAGGAAAACACACAAAGGTGAGTTCCAGGTTGAGGATGACCAAGATAGAGATATTGT ATCGGCAGAGGTTGCCATCGGGACAAATTCACTGAATTTGCCACGGCAACCCAAACCGAAACGAAAAGAAGCTTCTCCATCAGAGGGTGGAAACGCAAAA AACACAGAAAATTCTGAGTACACCGTCACAATTCCTTCAACTGAAGCAGGTGACTTGATGCAAGGTCTCATGGTGGATGATGAGCTGAAGGATGCCGAGT TTCTTCCCCCGATTGTTTCCCTTGATGAGTTTATGGAATCACTTAACAACGAGCCCCCATTTGAAACCTTACCTGAGGATGCTGCTGATAAGGCAACAAC TCCAGCTTCTGAAAAGAATGATTCGAAGGTCGACTCAGAAAACAAGTCTCCTGAAAATCTTGAAAAAGCTGGAAGCGAGGGAGAAAATGCCAAGTCCGAT GCCGCTGAGCAATCTAGCAAGGAGAATGACGAGATTTCGGAGACCACAACTGCTGTTGATATCATTAAAGGTGAACATACCTGGGAAGGGTTGCTGCAGC TCAACGTCTCTGCCACTGCTCCAGTTGTTGGCATCTTTAAAAGCGGGGAGAAGACACAGTCCAAGGACTGGCCTAGCTCGATCGAGATTAAGGGCCGAGT GAGACTGGAAGCATTTGAGAAGTTCTTGCAGGCGCTTCCGATGTCCCGAAGCCGTGCTGTCATGGTGGTGCATTTTGTGTGCAAGGAAGGGTCTAGCGAG AGCGAAAAGGCGAACATCGTCGAGGCGTCGGAGTCGTATGTATCAGACGAGAGAGTTGGGTTCGGTGAGCCGGCTCCTGGCGTGGAGCTCTACTTGTGCC CCCCTAACTCAAGAACATGTGACCTGCTAAGCAAAGTCCTGCCGCAGGATCAAATGGACGGCCTTAAATTGATTGAAAATGGTCTAATTGGTGCTATTGT ATGGAGAAAATCTCAAATAATAACACCATCGAACCATAAGCACAAAGACGACTCCAAAAAGCATTCGTCTTCCTCCTCTAGCAGGAGGCACCATCATACT GATGTCATCAATCGAAATGCCAAAAACCATGCCAGGCCTCAACCCGGTATGACCGCAGTTGGAAATGATGATGAGGATGATGATGACGTGCCTCCTGGGT TTGGTCCGTCCGCTGGCGGACCAAACCGGGACGAGGATGACTTGCGTGAGTTTAATTTCTCCAGTAGTAAGTCAGCAGCCACGAATAATAGGCCGGTTTT CCCTACCGGTCGTGTAGACCAAATGAGAGAGCTTATACATAGATATGGACAGCCGGGTCGCGATGCAAAAATCGGCAGTGTTTCTCTACAGACGGGGAAA GACGATGATGATGACGATGATATGCCGGAATGGCGGCCAGAAGATTCCCAGCGCCACATCGCGCCTCCTAGTAGCATGCGGAATCAGCAGCTGCCCAGTT TGCGACCCAACATTGTCCAGCACCTACCACCTCCTCCTCCTCCAGGCTGGCCGCAGCATCAGCAGCAAGGTGTCTGGACTTCCCCGGCTGCTCTGAACGT CTATCAGCAGCAGCAGCCGAACGGCGGAAGCCAGATTTACGGACAGCAAGGCTCGATATGGCCGACGAGAGACGCCCCTAAAAGTAGAGGCTTTTAG
AA sequence Show only first row Show all	>Lus10008108 pacid=23169781 polypeptide=Lus10008108 locus=Lus10008108.g ID=Lus10008108.BGIv1.0 annot-version=v1.0 MSQLEHISEKLDSSSQMGFGLDVGLHDPAMQLVSTPSTHMGVMGSVSSNAVSQPASMQMMEPVISPRLLQQSSMSNFQTRNIDPFSYNMTSENFLMPNNQ FSGIGSALQGQQAATNKRKAPMEGASPNPVPERYTAPKRFSLNEHRPWLQPTPVTSKLPVQVQSISPRPQGPPKKPAPAKTGTQYMPLKKNQTGQMQLSQ KVKNDSFDSVRSKMRESLAAALALVQDKSPDGLKDSKSTTTIGASEPPSSANDNSGSSELMDSLPGADFAGDAVLTHNPKKNVQGEQPLETVSIDDIPFS ENFYVKDELLQGNGLSWVIDSELELIDESGIGKKQLDQGDIPAVEKKQLLNPEILATKIEAELFKLFRGVNKKYKEKGRSLLFNLKDRNNPELREKVMQG DISPERLCSMTAEELASKELSEWRVAKAEEFAQMVVLPDSDVDIRKLVRKTHKGEFQVEDDQDRDIVSAEVAIGTNSLNLPRQPKPKRKEASPSEGGNAK NTENSEYTVTIPSTEAGDLMQGLMVDDELKDAEFLPPIVSLDEFMESLNNEPPFETLPEDAADKATTPASEKNDSKVDSENKSPENLEKAGSEGENAKSD AAEQSSKENDEISETTTAVDIIKGEHTWEGLLQLNVSATAPVVGIFKSGEKTQSKDWPSSIEIKGRVRLEAFEKFLQALPMSRSRAVMVVHFVCKEGSSE SEKANIVEASESYVSDERVGFGEPAPGVELYLCPPNSRTCDLLSKVLPQDQMDGLKLIENGLIGAIVWRKSQIITPSNHKHKDDSKKHSSSSSSRRHHHT DVINRNAKNHARPQPGMTAVGNDDEDDDDVPPGFGPSAGGPNRDEDDLREFNFSSSKSAATNNRPVFPTGRVDQMRELIHRYGQPGRDAKIGSVSLQTGK DDDDDDDMPEWRPEDSQRHIAPPSSMRNQQLPSLRPNIVQHLPPPPPPGWPQHQQQGVWTSPAALNVYQQQQPNGGSQIYGQQGSIWPTRDAPKSRGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	0	1
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	1.0	0.9410
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	3.2	0.9018
AT5G62620			Galactosyltransferase family p...		Lus10036685 [exp]	3.5	0.8786
AT3G09440			Heat shock protein 70 (Hsp 70)...		Lus10009071 [exp]	5.4	0.8200
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	7.0	0.8570
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	11.7	0.8684
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	13.3	0.8246
					Lus10034709 [exp]	14.3	0.8413
AT1G22960			Pentatricopeptide repeat (PPR)...		Lus10000364 [exp]	16.7	0.7999
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	20.0	0.8717

Compare expression of checked genes

Lus10008108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.