Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25530 404 / 8e-134 DNAJ heat shock family protein (.1) AT2G20560 368 / 5e-120 DNAJ heat shock family protein (.1) AT3G08910 358 / 2e-116 DNAJ heat shock family protein (.1) AT1G59725 347 / 5e-112 DNAJ heat shock family protein (.1) AT1G10350 341 / 2e-109 DNAJ heat shock family protein (.1) AT5G01390 338 / 7e-109 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 333 / 1e-106 DNAJ heat shock family protein (.1.2) AT3G47940 315 / 2e-99 DNAJ heat shock family protein (.1) AT2G20550 235 / 1e-70 HSP40/DnaJ peptide-binding protein (.1.2) AT1G09900 178 / 4e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021961 [exp] 428 / 2e-143 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 426 / 1e-142 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10017687 [exp] 357 / 9e-116 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 353 / 2e-114 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10030803 [exp] 351 / 2e-113 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10027803 [exp] 350 / 3e-113 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 350 / 4e-113 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 350 / 7e-113 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013280 [exp] 339 / 2e-108 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034600 [exp] 436 / 2e-146 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 417 / 6e-139 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 371 / 3e-121 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 358 / 3e-116 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 358 / 5e-116 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 352 / 2e-114 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 352 / 3e-114 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 349 / 9e-113 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 347 / 1e-111 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 313 / 5e-99 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008109 pacid=23169761 polypeptide=Lus10008109 locus=Lus10008109.g ID=Lus10008109.BGIv1.0 annot-version=v1.0 ATGCCCTTATGCTCCACTTCATCAATTAGCCACTCCAAGCTCGGCATCCGCAGATTCTCCTCCCTCCTTTTCTCCAAGCTCGCTTCTTTCTCCTCTTGTG CTCTCCAATCAGTCGAATCTGTCAATGGAACTTCCACTAATTTCACCTTCGAGGAATTGCAGCGTAGTATGCGTAGCTACGCCTCTTCCGGCGACCTCTT GCAAGCTCTCTGGACTTGCAATTTAATGAGAAGCTTCCCAAGTAAGCCTACTATTCATGATTACAATGCTCTATTCCACAGTTATTTGAATCATGGCGGG AATCCTTTCTCGGAATATTTGCTGCAAGTTTACTGGGAAATTCGGAGCAGCTCTGGGATACAACTAAATGCCATCACTTTTAATTTGCTCATCAATGGTT TGGTAGCTGCTGGCAATTTCAAAGTTGCATTCTTTATCATGGAAGATATGTTCTCCAGTGGCTTCATACCATCATTCACAGTTTTATCAAAGTTTCTGAA GAAATCTATGGAAATCAAGCGTTTGACTGATTCACTTGGTGTTTTTGATGTCATGTTGATGTTGGATTATATCCCTACAGAGCCATCTTTGAATGTGTTA ATCTGTATGCTTAGTAAGAAGGGAATGATTCATGAAGCATATATGGTATTCTCAGCTGTTCTTGCTAAAGGATGCTTCTTTGGAGTGTATATTTCGAATC CGATTCTTTGGTCTTTATGTAAATCCAGTCGCAGCTCTACTGCTTTGAGATTGTCTTACTGGCTGAAAAAGAATGGTGTTCCATTAGATGTCTGCTCTTA CACAGCTTTGGTTTACGGATTTTGTAAAGAAGGGAATTGGGAAGACGCATGTTTGTGTCTCGATGAGATGAAAGAGAGCGGTTCGAAAGCTAGCCTCGTT ACCTATACTATCGTGGTTCAGTTCTTGTGCGAGAACGGGAGGGTGGAAGAGGCATTGAGGTTTTTGAATTTAATGGAAGCTGAAGGATTTCGTCCGGACT TGCTTGTATATAATGTGATTCTACGCGAGTTATCGCGTTTGGATAGAACGGACGAGGCTTTTAGGGTTCTGCATTTTATTGTTTCGAGTGGATTGTGTCC TGATGCTTACACCATTGCTGTGCTAGCTGGAGGGTTGATAAAAGCCGGGAGAGTCCAGAATGCTGTCGGATTTTTGCTGGATGCGATTTCGGAAGGGTAT AGTGTTGATGTTGCGGTTTTCAATGTATATCTTCAGTGCTTGTGTAGGCAGAATCGAACGGAAGAAGCGTTGTCTTGGTTGGAAACCGGGTATGGGGAAC GTTTCGGTTTCGTTCCGAGCAATGTGTCGTATAACATCGTTCTGAACGGGTTCTGTAGAGAGAACAAGTTCAACATGGCTTTAGTGGTGTTGACTCTGTT CGAGCCTGATGTGGTTTCGTTTAATACCATTCTGTCTCGTGCTTGCAAGCTGAAGAACGATGAAATGGTCGAACGGATCTTGTACGGTATGGAGGATAAA GGGGTCGGACATGATGTCGTGACTTTGACTTGCTTGATACGGTATTGGTTCAGAGTTGGGAAAGTTTCGAGATGTGTGAAGGGTTTGGATTCTATGTTGG TTAATGGACCTAAACCAAACGTAGTGACTCTTAATGTTGCACTGGATGAGCTTTGCAAGTGTGGTTCGCTTGATTTGGCGATCCGAGTGTTTGAGAAGTT TAGGGATTATGGATTTGTGCCCGATGGGACGTCGTATTCTATTCTGTCACGAGCTCGGAATCAGAATCGGAATCGGAATCGACCTTATTACTACGAGATA CTGAAGGTGAGCAAGAACGCATCGGAGGACGATCTGAAGAGATCGTACAGAAGACTTGCTATGAAATGGCACCCCGACAAGAACCCCAACAACAAAAAAG ATGCTGAATCCAGATTCAAGCACATCTCTCAAGCTTATGATGCACTGAGCGACCCACGAAAGAGGGCGAATTACGACCTGTATGGCGAGGAAGGGCTGAA CGAAACCGTCCCTTCCGATGGAGGATTCAATTATTCAAGGAATGCTGAAGATATATTTGCCGAGTTTTTTGGGAGCAGCAGCCCATTTTCAAGATTCCAA CCAGCAAGATCATATTCAAGATTCCAACCAGATAATGAAGATTCCAAAACGCCAAAGAAGAAGGCTCCACCTGTGGAGAGCAAATTGCCTTGCAGCCTCA AGGAGCTCTACTCTGGATCCACCAGAAAAATGAAGATCTCAAGAACTGTAGCTGACTGCCATGGGAAGCAAGCTCAGGAAACAGAGATATTAACGATTGA TGTGAAGCCAGGATGGAAAAAGGGAACAAAGATAACATTCCCGGATAAGGGGAACGAGCAGCCTAACCAGCTTCCAGCAGACTTAGTGTTCGTAATCGAC GAGAAGCGTCACGATCTTTACAAAAGGGACGGCAATGATTTGACGATCAACCACCGCGTCAAGCTGGGTGAGGCACTGGGAGGAACCACTGTAAAGATCA CCACGTTGGACAGGCGTATTCTGTCAATTCCGGTGAACAACATCATAAGCCCCGGATACGAGCTTGTCGTTGCAATGGAAGGTATGCCGATAGCTAAAGA GCCGGGGAAGAGAGGAGACTTGAGGATCAAGTTTGAAGTGAAGTTTCCAACTATGTTGACCTCAGAGCAAAAAGCAGCCGTCAAACATGTCTTAGGAGCT TGA
AA sequence Show only first row Show all	>Lus10008109 pacid=23169761 polypeptide=Lus10008109 locus=Lus10008109.g ID=Lus10008109.BGIv1.0 annot-version=v1.0 MPLCSTSSISHSKLGIRRFSSLLFSKLASFSSCALQSVESVNGTSTNFTFEELQRSMRSYASSGDLLQALWTCNLMRSFPSKPTIHDYNALFHSYLNHGG NPFSEYLLQVYWEIRSSSGIQLNAITFNLLINGLVAAGNFKVAFFIMEDMFSSGFIPSFTVLSKFLKKSMEIKRLTDSLGVFDVMLMLDYIPTEPSLNVL ICMLSKKGMIHEAYMVFSAVLAKGCFFGVYISNPILWSLCKSSRSSTALRLSYWLKKNGVPLDVCSYTALVYGFCKEGNWEDACLCLDEMKESGSKASLV TYTIVVQFLCENGRVEEALRFLNLMEAEGFRPDLLVYNVILRELSRLDRTDEAFRVLHFIVSSGLCPDAYTIAVLAGGLIKAGRVQNAVGFLLDAISEGY SVDVAVFNVYLQCLCRQNRTEEALSWLETGYGERFGFVPSNVSYNIVLNGFCRENKFNMALVVLTLFEPDVVSFNTILSRACKLKNDEMVERILYGMEDK GVGHDVVTLTCLIRYWFRVGKVSRCVKGLDSMLVNGPKPNVVTLNVALDELCKCGSLDLAIRVFEKFRDYGFVPDGTSYSILSRARNQNRNRNRPYYYEI LKVSKNASEDDLKRSYRRLAMKWHPDKNPNNKKDAESRFKHISQAYDALSDPRKRANYDLYGEEGLNETVPSDGGFNYSRNAEDIFAEFFGSSSPFSRFQ PARSYSRFQPDNEDSKTPKKKAPPVESKLPCSLKELYSGSTRKMKISRTVADCHGKQAQETEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVID EKRHDLYKRDGNDLTINHRVKLGEALGGTTVKITTLDRRILSIPVNNIISPGYELVVAMEGMPIAKEPGKRGDLRIKFEVKFPTMLTSEQKAAVKHVLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25530			DNAJ heat shock family protein...		Lus10008109 [exp]	0	1
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	3.9	0.8002
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10040648 [exp]	4.2	0.7781
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	9.6	0.7723
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10005210 [exp]	11.2	0.7001
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	11.3	0.7599
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10018492 [exp]	13.8	0.7387
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	15.0	0.7080
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	21.8	0.7278
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	26.1	0.7270
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	29.5	0.7134

Compare expression of checked genes

Lus10008109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.