Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 462 / 7e-161 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT1G72540 458 / 2e-159 Protein kinase superfamily protein (.1) AT2G26290 447 / 2e-155 ARSK1 root-specific kinase 1 (.1) AT5G35580 443 / 6e-153 Protein kinase superfamily protein (.1) AT5G01020 387 / 3e-132 Protein kinase superfamily protein (.1) AT1G61590 385 / 6e-131 Protein kinase superfamily protein (.1) AT3G28690 357 / 1e-120 Protein kinase superfamily protein (.1.2.3) AT5G15080 358 / 7e-120 Protein kinase superfamily protein (.1) AT3G01300 357 / 2e-119 Protein kinase superfamily protein (.1) AT5G56460 352 / 2e-118 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013148 [exp] 823 / 0 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10034897 [exp] 471 / 1e-163 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 468 / 4e-162 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 447 / 6e-155 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 447 / 8e-155 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 391 / 4e-134 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 391 / 3e-133 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 386 / 7e-131 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 366 / 2e-122 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168000 [exp] 551 / 0 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 551 / 0 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 488 / 3e-171 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 484 / 6e-170 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 401 / 2e-137 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 399 / 2e-136 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 397 / 1e-135 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 397 / 1e-135 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 372 / 1e-126 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 368 / 4e-125 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10008110 pacid=23169732 polypeptide=Lus10008110 locus=Lus10008110.g ID=Lus10008110.BGIv1.0 annot-version=v1.0 ATGGTTGTCTTCAAAGGTTCCAAATGGAACCCAAACCTTCTCCTAAGCTGTTTCAAGCCCAGAGATTCATCATCATCATCTTCTGATCACGATCCGAAAT CGACGAAGAACAATCACAAGGTGTGTTCAAGCAGAATCTCACTGCTGGACTGGAGCAACCCGGAATCACAGCTCTCAGTGATGAGTGACCTGTCAAACCC TGTCTTCAACCTCCACATCTTCACCCTCAAGGAGCTTCAAAAAGTCACCAGCAACTTCTCCAGGAGCAATTACCTCGGAGAAGGCGGGTTCGGAGCGGTG TTCAAAGGGTTCGTGGATGGAAAGATCCGGCCCGGTTTGAATGCTCAGCCTGTTGCTGTCAAAGTTCTTGACTTGGATGGCTCCCAGGGCCACAGAGAAT GGCTGGCTGAGGTGATATTCCTGGGACAATTGAAGCATGATCATCTGGTGAACTTGATTGGATACTGCTGTGAGAATGAACAGAGGCTTCTGGTTTATGA GTACTTGGAACGTGGGAATCTTGAGCATCTCCTTTTCAGAAGATATACAGCTTCACTTCCTTGGCTAACAAGGCTCAAGATTGCTGCAGGAGCAGCAAAA GGGCTTGCTTTCCTTCATGAAGAGGAGAAACCGGTCATCTACCGCGATTTCAAGACTTCCAACATCTTGCTCGACTCGGACTATAATGCAAAGCTGTCGG ATTTCGGGCTGGCCACAGACGGTCCAGAAGGAGACGAAACCCACGTTACGACTCAAGTGATGGGCACAGAGGGCTATGCAGCGCCCGAGTACATATCAAC GGGCCATCTCTCATCCATGAGCGATGTGTTCAGCTTTGGCGTGGTGCTACTAGAGCTGCTAACCGGTCGGAGGTCAGTGGACAAGACCCGGCCACCTAGA GAACAAGTGCTTGTGAAATGGGCAAGACCATTCCTCAAGGACCACCACAGGCTTGATCAGATCATGGACCCGAGGCTAGAAGGGCAGTACTCGGTCGAAG GGGCCAGGAAGGCGGCAGCATTGGCTAGTCAATGCTTGAGCCACCATGCCAAGTGTAGGCCAAGTATGAGCAAAGTTGTGAAGACCCTGGAGGGCTTGAT GGAGTTGCAAGATGACATTCAAGTTGGCTTCTTTGTGTACATTGTGCCCACAGAGTGTAAACCCGAGAAAGGCACCGTTGTGATGAAGTGTTCGGAGCAG AGCGATCGTGGCGCGAATAAGGAAGAATCAAAGCAAGAGAAAGTTAGAGGGAGGAGGAAGAAGAAGAAGGGTAAAGCTGTAGTTCATTCTGATACAGATT TGTACAAAAGATTAGGGACTAGTTTGTATTCCCCTAAGACATTACAAAGGTAA
AA sequence Show only first row Show all	>Lus10008110 pacid=23169732 polypeptide=Lus10008110 locus=Lus10008110.g ID=Lus10008110.BGIv1.0 annot-version=v1.0 MVVFKGSKWNPNLLLSCFKPRDSSSSSSDHDPKSTKNNHKVCSSRISLLDWSNPESQLSVMSDLSNPVFNLHIFTLKELQKVTSNFSRSNYLGEGGFGAV FKGFVDGKIRPGLNAQPVAVKVLDLDGSQGHREWLAEVIFLGQLKHDHLVNLIGYCCENEQRLLVYEYLERGNLEHLLFRRYTASLPWLTRLKIAAGAAK GLAFLHEEEKPVIYRDFKTSNILLDSDYNAKLSDFGLATDGPEGDETHVTTQVMGTEGYAAPEYISTGHLSSMSDVFSFGVVLLELLTGRRSVDKTRPPR EQVLVKWARPFLKDHHRLDQIMDPRLEGQYSVEGARKAAALASQCLSHHAKCRPSMSKVVKTLEGLMELQDDIQVGFFVYIVPTECKPEKGTVVMKCSEQ SDRGANKEESKQEKVRGRRKKKKGKAVVHSDTDLYKRLGTSLYSPKTLQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	2.6	0.8340
AT1G52540			Protein kinase superfamily pro...		Lus10031673 [exp]	3.9	0.8564
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	5.3	0.8797
AT1G71910			unknown protein		Lus10016934 [exp]	6.2	0.8692
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	11.6	0.8228
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10010956 [exp]	18.0	0.8038
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	18.8	0.8447
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	21.8	0.7951
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	22.8	0.8533
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Lus10024515 [exp]	23.0	0.8094

Compare expression of checked genes

Lus10008110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.