Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 382 / 2e-127 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G48310 365 / 2e-121 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G26330 358 / 2e-118 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT1G01280 353 / 2e-116 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G06900 352 / 6e-116 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT3G48270 350 / 2e-115 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT5G57260 350 / 2e-115 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G48280 347 / 2e-114 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26320 345 / 2e-113 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26310 344 / 5e-113 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 932 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 601 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 398 / 7e-134 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10035502 [exp] 394 / 3e-132 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10043308 [exp] 380 / 6e-127 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 380 / 1e-126 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021620 [exp] 362 / 8e-120 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10041951 [exp] 361 / 2e-119 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021158 [exp] 360 / 5e-119 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066400 [exp] 763 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 762 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 695 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 694 / 0 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 692 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 645 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 644 / 0 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 642 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 409 / 1e-138 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 409 / 1e-137 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10008112 pacid=23169744 polypeptide=Lus10008112 locus=Lus10008112.g ID=Lus10008112.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGTATCCGATCACTCTCTCAAGCACCACCACTCTAGCCACCGCATGGGCGATCACCGTCGCCGCAATCCTCCTCGCCGGTTGGCTCCGCC GCCGCAGCCGGCGTAATCCAAACCCGCCACCGGGCCCAACACCCTGGCCCATTATCGGCAACCTCAACCTGATAGGCACACTACCCCACCGGTCCCTCCA CTCCCTCTCCCAAAAATACGGGCCCATCATGCAGCTCCGATTCGGGTCCCACCCAGTCGTCGTCGGGTCCTCCGTCGACATGGCCAAATCCATCCTCAAG ACCCACGACCTCGCCTTCGCCGGCCGCCCGGAGATTGCCGCCGGGAAGTACACCACCTACGAATACTCCGACATCACCTGGTCCCAGTACGGCCCTTACT GGCGGCAGGCGAGGAAGATGTGTTTAACCGAGCTCTTCAGCGCCAAACGGGTCGGGTCGTACGAATACATCCGGCGGGAGGAGATGAAATGGGTCGTCAA CAACCTTTTCGGGTCGTGCGGAAACCCGATTAACTTGAAGGACCATTTGTCCGATCTGAGCCTCAATGTGATCAGCCGGATGGTTCTGGGCAAGAAATAC ACCAATTCCGGCGACGGAGAGAATGAAATTGTGACGCCGGAGGAGTTTAAGGAGATGCTGGACGAGCTTTTTCTGCTGAACGGTGTGTTGGATATCGGAG ATTCGATTCCGTGGCTGGCGGGGCTGGATCTGCAAGGGTATATAAAAAGGATGAAGGCGGTGGCGAAGAAATTCGATGCCTTTCTCGAGAGGGTTTTGGA TGAGCATAATTCGAGGAGGCGGGTGAAGGATTTTGTGGCGAAGGATATGGTGGATGTTTTGTTGGAGCTCGCCGCCGATCCTGATTTGGAGGTCAAGCTT GATCGCCGGGGAGTTAAGGCGTTTACTCAGGATATGATTGCCGGCGGTACAGAGAGTTCGGCGGTGACGGTAGAATGGGGGATATCGGAACTGTTAAAGA GGCCGGAGATATTCGAAAAAGCGACCGAGGAGCTAGACAGAGTAGTGGGGAGAGAGCGTTGGGTCGAAGAGAAAGACGTGGCCAACCTGTCGTACATCAA CGCGATCGTGAAAGAGACAATGAGGCTGCACCCCGTGGCGCCACTGTTGGTTCCCAGGATGGCCCGTCAGGATGTCGACATTGCCGGCTACCGGGTGGCT AAGGGGACGCGAATATTGGTCAACACTTGGACGATAGGGAGGGATCCGGCCATCTGGGACGATCCAGAGGAGTTCCAGCCCGAGAGGTTTATAGGAAAAG AGATTGATGTGAAGGGTCACGATTTCGAGTTGTTGCCGTTCGGTGCTGGGAGGAGGATGTGTCCCGGGTATCCGTTGGGGATCAAAGTGATTCAAGCTAG CTTGGCTAACCTTGTGCATGGGTTCAAGTGGGGATTGCCAAGTGGGATGAAGAAAGAGGATTTGAATATGGAGGAGATTTATGGACTCTCTACTCCTAAG AAGTTCCCACTTGTTGCCGTTGCTCAACCTAGGCTTCCACTTCATCTCTATGCCAACTGA
AA sequence Show only first row Show all	>Lus10008112 pacid=23169744 polypeptide=Lus10008112 locus=Lus10008112.g ID=Lus10008112.BGIv1.0 annot-version=v1.0 MEKMYPITLSSTTTLATAWAITVAAILLAGWLRRRSRRNPNPPPGPTPWPIIGNLNLIGTLPHRSLHSLSQKYGPIMQLRFGSHPVVVGSSVDMAKSILK THDLAFAGRPEIAAGKYTTYEYSDITWSQYGPYWRQARKMCLTELFSAKRVGSYEYIRREEMKWVVNNLFGSCGNPINLKDHLSDLSLNVISRMVLGKKY TNSGDGENEIVTPEEFKEMLDELFLLNGVLDIGDSIPWLAGLDLQGYIKRMKAVAKKFDAFLERVLDEHNSRRRVKDFVAKDMVDVLLELAADPDLEVKL DRRGVKAFTQDMIAGGTESSAVTVEWGISELLKRPEIFEKATEELDRVVGRERWVEEKDVANLSYINAIVKETMRLHPVAPLLVPRMARQDVDIAGYRVA KGTRILVNTWTIGRDPAIWDDPEEFQPERFIGKEIDVKGHDFELLPFGAGRRMCPGYPLGIKVIQASLANLVHGFKWGLPSGMKKEDLNMEEIYGLSTPK KFPLVAVAQPRLPLHLYAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	0	1
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	3.5	0.9749
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	3.6	0.9787
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	4.0	0.9775
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	7.1	0.9623
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	7.4	0.9675
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	7.7	0.9640
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	8.2	0.9723
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	8.9	0.9709
AT1G05060			unknown protein		Lus10030021 [exp]	9.5	0.9644
					Lus10013034 [exp]	9.7	0.9590

Compare expression of checked genes

Lus10008112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.