Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72520 1376 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 1375 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 876 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 765 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G55020 732 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 726 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013151 [exp] 1746 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 1568 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10006429 [exp] 916 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031810 [exp] 805 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 792 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 788 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 787 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 778 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 741 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167700 [exp] 1457 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.003G067600 [exp] 1043 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.010G057100 [exp] 989 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 976 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G015500 [exp] 866 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 863 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 851 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 831 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 797 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.005G032400 [exp] 744 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10008113 pacid=23169727 polypeptide=Lus10008113 locus=Lus10008113.g ID=Lus10008113.BGIv1.0 annot-version=v1.0 ATGGCTTTGACCAGAGAAATCACCGGCGGTGCTTCCTTATTCCACCGGCCGTCATTCCTTCCTTCCACCAATCTGCTCAGCACCAGACCAGTTTTGCTCC CTACGAGAAGAAGACCCATTGTCGTGGCAGCAATTAGCGAGGATTTGATCCAGAAGGTCACAAATTTCGTCTCATCGGAAAATCCGGCGCCGCCGCCGCC GCCCCCGGCCAAGTTCACCGTTAGAGCTGTGGTGACGGTAAAAAACAAGAACAAAGAAGATTTCAAAGAGTCCCTTGTGAAAAGGATTGATTCTTTCACT GATAAGATCGGCAGAAACGTGGTATTGGAGCTGATTAGTACTGAGCTCGATCCAAAAACTAATGCGCCAAAGAGAAGCAAAGGAGCTGTGTTGAAGGACT GGTCAAAGAAGTCGAATGTTAAAGCTGAGAGGGTTCATTACTCAGCTGATTTTACAGTGGATTCTGATTTTGGTGTTGTTGGAGCAATCACTGTGAGTAA TAAGCATCAGAGGGAGTTTTTTCTGGAGAGTATTACTCTTGAAGGTTTTGCTTCTGGTCCAGTCCATTTCCCTTGCAATTCCTGGGTTCAATCCACCAAA CATCATCCTGCTAAGAGGATCTTCTTCTCCAATGAGCCATATCTGCCAAGTGAGACTCCATCTGGACTTAGAGCATTGAGAGAAAGAGAGCTTAAAGATC TAAGAGGAGATGGAACTGGAGTCAGAAAATTATCTGATAGGATCTATGACTATGATATCTACAATGATCTTGGGAATCCAGATAAGGGTATTGACTATGC TAGGCCGGCACTCGGTGGTGAGAAAATCCCGTATCCAAGAAGGTGTCGTACTGGCCGCGAACCAACCTATACTGATTGGAATGCTGAGAGCCGTGTGGAG AAGCCGACGCCAATGTACGTGCCTAGAGACGAACAATTCGAGGAGTCCAAGAAGAAATCATTCTCATATGGGAGACTCAAGGCGGTACTGCACACTCTCG TGCCAATGCTGAAGGCCAGCATTACCGCTCAGAATCGCGATTTTAGTGCTTTTGCGGATATTGACATACTCTACAAAGAAGGTATCCTCCTTAAAGTCGG GATCCAGGACGAAATCTGGAAGAAGCTTCCTTTGCCGAAGGCGGTTTACAGTTTCACTGAGTCCAGTGAAGGACTTCTCAGATATGACACTCCCAAGATC CTTTCCAAGGACAAGTTTGCCTGGTTGAGAGACGACGAATTCGCTCGCCAAGCCATTGCTGGTGTTAATCCGATTAACATCAAACGTCTCAAGGAGTTCC CACCTAAGAGCAACCTGGATCCCGAAATATACGGTACACTCGAATCTGCACTTAAGGAAGAACACATCTTGGGACAAATTGATGGCATGTCAGTTCAACA GGCTTTGGAGGAGAACAAGCTGTTCATAGTGGATTACCATGATGCTTATCTTCCATTTCTGGATAAGATCAATGCCCTTGATGGAAGGAACACATATGCA ACTCGAACCGTGTTTTTCCTAACCTCTCAAGGTACACTTAAGCCGATAGCGATCGAGCTCAGTCTTTCTCCAGGAGGGCCACCCTCGAGATCCAAACGAG TGATTACTCCACCGGTTGACGCGACCAGCTACTGGATTTGGCAATTGGCAAAGTCTCATGTTTGCTCCAATGATGCTGGTGTTCATCAACTGGTTAATCA TTGGTTGCGAACGCATGCCTGTATGGAGCCGTTTATACTGGCGGCACACCGGCAACTGAGTGCGATGCACCCGATTTTTAAGCTCTTGGATCCTCACATG AGATATACGCTCGAGATCAATGCTCTTGCTCGCCAGAGCTTGATCAATGCCGATGGTGTTATCGAGTCGTGCTTCACTCCTGGCCGGTACTGCTCCGAGA TAAGCGCTGCAGCGTATAAGAACTTTTGGCGGTTCGACAAGGAAGGCCTCCCTGCTGATCTCATCCGAAGAGGGATGGCAGTACCAGATCCAACACAACC ACATGGCTTGAAGCTTCTACTTGAAGACTACCCATATGCTCAAGACGGGCTCTTGATCTGGTCCGCCATCGAAAACTGGGTCCGAACCTACGTAAACCAT TACTACCCTAACCGAATCACGGTCCAAAACGATTCGGAGCTACAATCCTGGTACTCCGAGTCCATCAACATAGGCCACGCGGATTTACGCAACGCAGATT GGTGGCCTACGTTGGAAAGCAGCGAAGATCTTATCTCGATCCTCACGACAATCATATGGATCGCATCCGCACAACACGCGGCTCTCAATTTCGGACAGTA CCCTTACGGAGGCTACGTTCCGAACCGACCACCCTTGATGAGACGGCACATACCGGACCAAAACGACCCCGAGTACGAAAGCTTCCAATCCGACCCTCAG AGGTTTTTCCTCTCAGCATTGCCGAGTTTGTTACAAGCGACGAAGTTTATGGCAGTGGTGGACACACTTTCGACACATTCGCCGGATGAAGAGTATTTAG GGGAGAGACAGCAGCCGTCGGTGTGGTCGGGGGATGCTGAGGTGGTGGAGGCGTTTTACGAGTTTTCGGCTGAGATTCAGCGGATAGACAAGGAGATCGA GAGGAGGAATAACGATCCGAGCTTGAAGAGTAGGTGCGGTGCGGGTGTGTTGCCTTACGAGCTGCTGGCTCCGAGCTCGGATCCCGGGGTGACTTGTAGA GGAGTGCCGAATAGTGTGTCTATATGA
AA sequence Show only first row Show all	>Lus10008113 pacid=23169727 polypeptide=Lus10008113 locus=Lus10008113.g ID=Lus10008113.BGIv1.0 annot-version=v1.0 MALTREITGGASLFHRPSFLPSTNLLSTRPVLLPTRRRPIVVAAISEDLIQKVTNFVSSENPAPPPPPPAKFTVRAVVTVKNKNKEDFKESLVKRIDSFT DKIGRNVVLELISTELDPKTNAPKRSKGAVLKDWSKKSNVKAERVHYSADFTVDSDFGVVGAITVSNKHQREFFLESITLEGFASGPVHFPCNSWVQSTK HHPAKRIFFSNEPYLPSETPSGLRALRERELKDLRGDGTGVRKLSDRIYDYDIYNDLGNPDKGIDYARPALGGEKIPYPRRCRTGREPTYTDWNAESRVE KPTPMYVPRDEQFEESKKKSFSYGRLKAVLHTLVPMLKASITAQNRDFSAFADIDILYKEGILLKVGIQDEIWKKLPLPKAVYSFTESSEGLLRYDTPKI LSKDKFAWLRDDEFARQAIAGVNPINIKRLKEFPPKSNLDPEIYGTLESALKEEHILGQIDGMSVQQALEENKLFIVDYHDAYLPFLDKINALDGRNTYA TRTVFFLTSQGTLKPIAIELSLSPGGPPSRSKRVITPPVDATSYWIWQLAKSHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHM RYTLEINALARQSLINADGVIESCFTPGRYCSEISAAAYKNFWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLLEDYPYAQDGLLIWSAIENWVRTYVNH YYPNRITVQNDSELQSWYSESINIGHADLRNADWWPTLESSEDLISILTTIIWIASAQHAALNFGQYPYGGYVPNRPPLMRRHIPDQNDPEYESFQSDPQ RFFLSALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSVWSGDAEVVEAFYEFSAEIQRIDKEIERRNNDPSLKSRCGAGVLPYELLAPSSDPGVTCR GVPNSVSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	0	1
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	1.7	0.9405
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	2.0	0.9439
AT5G38700			unknown protein		Lus10002433 [exp]	2.6	0.9545
AT2G12400			unknown protein		Lus10008028 [exp]	4.5	0.9336
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	6.5	0.9242
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	6.9	0.9359
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006332 [exp]	7.7	0.9268
AT4G34950			Major facilitator superfamily ...		Lus10025053 [exp]	8.1	0.9087
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	9.2	0.9219
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	9.7	0.9198

Compare expression of checked genes

Lus10008113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.