Plant FIBer expression Database

Lus10008115 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20570 108 / 5e-32 HRT1, ROC1, RBX1, ATRBX1 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
AT3G42830 104 / 2e-30 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013153
[exp]
118 / 8e-36 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Lus10015667
[exp]
112 / 2e-33 AT5G20570 200 / 5e-68 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Lus10037680
[exp]
110 / 5e-33 AT5G20570 122 / 9e-38 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Lus10015126
[exp]
37 / 0.0006 AT3G05870 156 / 2e-50 anaphase-promoting complex/cyclosome 11 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G067100
[exp]
111 / 2e-33 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Potri.001G167400
[exp]
111 / 2e-33 AT5G20570 203 / 3e-69 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
Potri.006G141300
[exp]
110 / 5e-33 AT5G20570 209 / 1e-71 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10008115 pacid=23169750 polypeptide=Lus10008115 locus=Lus10008115.g ID=Lus10008115.BGIv1.0 annot-version=v1.0
ATGGATACCGACGTCAACATGATTCCGGCCGGCGAGGCGAGCTCCAGCACCCCCGGACCTTCTTCCTCTGCCAAGAAACCCAAGCGTTTCGAGATCAAAA
AGTGGAATGCCGTCGCTCTGTGGGCATGGGATATTGTGGTGGATAACTGCGCGATTTGCAGGAATCATATCATGGATCTGTGCATCGAGTGCCAAGCTAA
TCAAGCTAGTGCCACCAGCGAGGAGTGCACTGTTGCTTGGGTGCATATTGCTCATCTAGCTCATCTGTATATTGCTGAAGGGGAAGGTGGTTGA
AA sequence
>Lus10008115 pacid=23169750 polypeptide=Lus10008115 locus=Lus10008115.g ID=Lus10008115.BGIv1.0 annot-version=v1.0
MDTDVNMIPAGEASSSTPGPSSSAKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWVHIAHLAHLYIAEGEGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10008115
[exp]
0 1
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10013153
[exp]
1.0 0.8262
AT2G34050 unknown protein Lus10020428
[exp]
4.2 0.7399
AT1G16916 unknown protein Lus10024703
[exp]
7.6 0.6907
AT4G29390 Ribosomal protein S30 family p... Lus10002508
[exp]
11.0 0.7568
AT2G35605 SWIB/MDM2 domain superfamily p... Lus10034774
[exp]
20.2 0.6897
AT1G03330 Small nuclear ribonucleoprotei... Lus10029641
[exp]
21.2 0.7772
AT3G61540 alpha/beta-Hydrolases superfam... Lus10010141
[exp]
22.0 0.7547
Lus10000657
[exp]
25.4 0.6930
AT2G28430 unknown protein Lus10022580
[exp]
26.2 0.7258
AT3G56190 ASNAP, ALPHA-SN... alpha-soluble NSF attachment p... Lus10002410
[exp]
30.7 0.7356

Lus10008115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.