Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14067 608 / 0 Subtilase family protein (.1) AT2G05920 492 / 1e-167 Subtilase family protein (.1) AT5G67360 467 / 1e-157 ARA12 Subtilase family protein (.1) AT4G34980 455 / 4e-153 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 436 / 2e-145 Subtilase family protein (.1) AT5G51750 415 / 2e-137 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 397 / 2e-130 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 395 / 9e-130 ATSBT5.4 Subtilase family protein (.1) AT1G04110 385 / 5e-126 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 384 / 1e-125 SBTI1.1, ATSBT1.1 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013154 [exp] 890 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 473 / 4e-163 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 479 / 2e-162 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 478 / 6e-162 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 478 / 7e-162 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 469 / 6e-159 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 457 / 2e-153 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 453 / 3e-152 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 442 / 4e-148 AT1G01900 825 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167300 [exp] 667 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 664 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 474 / 1e-160 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 472 / 2e-159 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 461 / 2e-155 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 456 / 3e-153 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 448 / 3e-150 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G074600 [exp] 440 / 3e-147 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.005G145300 [exp] 435 / 2e-146 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 431 / 2e-143 AT3G14240 1199 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10008116 pacid=23169743 polypeptide=Lus10008116 locus=Lus10008116.g ID=Lus10008116.BGIv1.0 annot-version=v1.0 ATGGAACAGGCGATCGAAGACGGAGTCGATGTGATCTCTCTTTCGGTCGGATCTAGCTATGCGTCGCCTTACGACGCAGATTCGATCGCGATCGGAGCTT TTTCCGCCGCCAGGGAAGGCATCGTCGTGTCCTGCTCGGCTGGAAATTCCGGCCCTGGAGCTTACACCGCTTCGAACATCGCGCCGTGGATTTTAACAGT TGGAGCTTCCACGATCGATCGGGAGTTTCCGGCGGATGTTGTCCTCGGCGACGGATCCATACACGGCGGAGTTTCTCTTTACTACGCAGACGACGGTGGA GTTCCTCAGGAAGAGCTGCTTCCGCTGGTGTACAGCGCCGATTGCGGTAGCCGGTACTGCTATTCTGGCAATCTCGATCCGGCGAAAGTCAAAGGGAAGA TTGTGCTGTGTGATCGTGGAGGCAATGCGAGAGTCGAAAAGGGAGCCGCCGTGAAACTGGCCGGAGGTGTTGGGATGATCATGGCGAATACTGATTTGGA AGGGAATGAACTGCTGGCTGACGCTCATTTGATCCCGGCGACGATGGTTGGATCGACTGAAGGGGATAAGATCCGTGAATACATCCAATCGGCAGCGGCT CCTACTGGTACGATTCAGTTCAAGGGAACTGTGATCGGAGAAGATACACCGCCGGCTCCTAAAGTCGCGTCGTTCTCCAGCCGTGGACCGAATCGGATCA CACCGGAGATTCTTAAGCCGGATGTTATTGCTCCCGGAGTCAACATTTTGGCCGGTTGGACCGGCGCAGCTAGTCCTACTGACTTAGACATTGATACTAG AAGAGTCAAATTCAACATCATATCAGGAACGTCGATGTCGTGCCCACACGTCAGCGGGTTAGCAGCATTACTAAAGAAGGCACATCCAGATTGGTCACCG GCTGCCGTAAAATCAGCTCTAGTAACCACCGCAACAACTCTAGACAACACCGGAGCCAACATCAATGATCTAGCCACTGGAAAAGGCACGAACCCGTTCG TTTACGGAGCAGGACACGTCGATCCAAACGCAGCTCTAAATCCCGGCCTCATCTACGACATCAACACAACTGACTACATCGCATTCTTCTGCTCGATCGG GTACACACCCGCCCGTATTGCAGTCTTCTTCGGCGCGCCAGTCAAGTCAAACATCTGCGACGAACTGACAGCCGGTCCCGGGGATCTCAACTACCCCTCG TTCTCCGTAACGTTCAAACACGGTGTTAATGCGGTGACGTACAAGAGGGTTGTGACGAACGTTGGGAGCGCGGTCGATGCTGTTTACAAACTTAAAATCA ACGCCCCTGCGAACGTTGATGTCAAGGTTTCGCCAAGCGAGCTTGTGTTTAGCGGCGAGAATCGCTCGTTGTCGTACGAGATCAAGTTCTCGAGCGTGGT TAGTGGTTTCGCGAACGCTGCGACGCAGAGCTTCGGGTTCGTAGAGTGGAGTGATGGAGGGCATCGAGTTCGGAGTCCAGTTGCTGCACAGTGGAGCCAG GGAGCTTCCGTGGAGTCTATTTAA
AA sequence Show only first row Show all	>Lus10008116 pacid=23169743 polypeptide=Lus10008116 locus=Lus10008116.g ID=Lus10008116.BGIv1.0 annot-version=v1.0 MEQAIEDGVDVISLSVGSSYASPYDADSIAIGAFSAAREGIVVSCSAGNSGPGAYTASNIAPWILTVGASTIDREFPADVVLGDGSIHGGVSLYYADDGG VPQEELLPLVYSADCGSRYCYSGNLDPAKVKGKIVLCDRGGNARVEKGAAVKLAGGVGMIMANTDLEGNELLADAHLIPATMVGSTEGDKIREYIQSAAA PTGTIQFKGTVIGEDTPPAPKVASFSSRGPNRITPEILKPDVIAPGVNILAGWTGAASPTDLDIDTRRVKFNIISGTSMSCPHVSGLAALLKKAHPDWSP AAVKSALVTTATTLDNTGANINDLATGKGTNPFVYGAGHVDPNAALNPGLIYDINTTDYIAFFCSIGYTPARIAVFFGAPVKSNICDELTAGPGDLNYPS FSVTFKHGVNAVTYKRVVTNVGSAVDAVYKLKINAPANVDVKVSPSELVFSGENRSLSYEIKFSSVVSGFANAATQSFGFVEWSDGGHRVRSPVAAQWSQ GASVESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14067			Subtilase family protein (.1)		Lus10008116 [exp]	0	1
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	11.4	0.8420
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10034538 [exp]	38.4	0.7883
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	41.8	0.7719
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033060 [exp]	42.5	0.7855
AT1G75590			SAUR-like auxin-responsive pro...		Lus10034507 [exp]	45.4	0.8040
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	58.5	0.7653
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	66.9	0.7888
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	74.0	0.7704
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	101.5	0.7409
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	113.0	0.7602

Compare expression of checked genes

Lus10008116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.