Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54100 843 / 0 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT1G79440 206 / 3e-60 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 201 / 7e-58 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G24503 182 / 3e-51 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G74920 182 / 3e-51 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48000 178 / 1e-49 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G48170 169 / 2e-46 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT2G14170 145 / 5e-38 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT2G24270 128 / 7e-32 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G66658 120 / 6e-29 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013155 [exp] 976 / 0 AT1G54100 886 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Lus10029166 [exp] 181 / 2e-50 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 179 / 1e-49 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10034115 [exp] 177 / 7e-49 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 174 / 2e-48 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10001845 [exp] 173 / 1e-47 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10023625 [exp] 170 / 1e-46 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 165 / 6e-45 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 164 / 2e-44 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G067700 [exp] 875 / 0 AT1G54100 850 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Potri.001G167100 [exp] 867 / 0 AT1G54100 823 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Potri.010G174000 [exp] 197 / 9e-57 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.012G075600 [exp] 194 / 7e-56 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.002G189900 [exp] 194 / 1e-55 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.012G078700 [exp] 186 / 1e-52 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 185 / 3e-52 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G070600 [exp] 184 / 6e-52 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.018G075000 [exp] 166 / 3e-45 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.001G242333 [exp] 164 / 3e-44 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10008117 pacid=23169772 polypeptide=Lus10008117 locus=Lus10008117.g ID=Lus10008117.BGIv1.0 annot-version=v1.0 ATGGGGTTCGAGAAGAAAGAGCATGAATTTCTGGGCGAGATCGGGCTGAGCTCGAGCAATCCTGGCTGTTATGTGGGTGGGAAATGGAAGGCTAATGGAC CTGTGATCACAACTACGAACCCTGCCAACAACCAGACAATTGCTGAAGTGGTTGAGGGTTCCATGGAAGACTATGAGGAGGGCTTGAAAGCTTGCAGTGA AGCAACAAAGACATGGATGCAGGTTCCAGCACCAAAGAGAGGTGAGATTGTTAGGCAGATTGGAGATGCACTCAGAGCCAAACTTGATCATCTCGGCCGT CTTGTCTCTCTCGAGATGGGCAAGATACTGGCTGAAGGAGTAGGAGAAGTTCAGGAAATTATCGACATGTGTGATTTCGCTGTCGGGTTGAGCAGGCAAC TGAACGGATCTATTATCCCTTCCGAGCGCCCGAACCACGCCATGTTGGAGATGTGGAACCCTCTCGGAATTGTTGGTGTTATCACTGCTTTCAACTTCCC TTGTGCTGTTCTTGGATGGAATGCTTGCCTTGCGCTAGTTTGTGGAAACTGCGTTGTCTGGAAAGGTGCTCCAACTACACCTTTGGTCACCATAGCAATG ACAAAGCTGATCGCTGAGGTGCTCGAGAAGAACAACTTACCTGGTGCGATATTTACATCGTTATGTGGTGGTGCCGAAATTGGTCAAGCCATAGCGAAAG ACACTCGCATACCTCTAGTCTCCTTCACCGGCAGTTCAAAGGTGGGACAAATGGTGCAGCAAATAGTCAGCCAGAGATTCGGCAAATGCTTGCTCGAGTT AAGTGGAAACAACGCCATTATCGTTATGGACGATGCAGACGTTCAGCTTGCCGCCCGTTCGGTTCTCTTTGCTGCTGTTGGGACAGCCGGTCAGCGATGC ACAACTTGCCGTCGGCTGCTCCTCCACGAGAGCATCTACAAGAAAGTACTTGATCAGCTTGTCGAAGCTTACAAGCAAGTGAAAATCGGCGATCCGTTGG AGAAAGGCACCCTGCTTGGACCGTTGCATACTACCGAATCGAGGAAAAACTTCGAGAGGGGAATCGAGCTCGGAGGGAATATCCTGACCGGAGGATCGAT CATAAAATCTGACGGGAATTTCGTACAGCCAACAATTGTAGAGGTTGCTCCAACTGTAGTTGCAGTTAAAGAAGAGCTCTTTGCTCCTGTTCTGTATGTT ATGAAATTTAAGACTTTGCAAGAGGCTATTGATATAAACAACTCAGTGCCACAAGGATTGAGCAGTTCTATCTTTACCCAGAAGCCCGAAACCATCTTCA AATGGATCGGGCCACTGGGGAGCGACTGCGGTATTGTGAATGTGAACATACCGACAAATGGTGCAGAAATCGGTGGCGCATTTGGTGGCGAAAAGGCTAC CGGGGGTGGTCGAGAAGCTGGAAGTGATTCGTGGAAGCAGTACATGCGCCGATCCACTTGCACAATCAATTATGGAAACGAGTTGCCTCTAGCTCAAGGA ATCAATTTCGGCTAG
AA sequence Show only first row Show all	>Lus10008117 pacid=23169772 polypeptide=Lus10008117 locus=Lus10008117.g ID=Lus10008117.BGIv1.0 annot-version=v1.0 MGFEKKEHEFLGEIGLSSSNPGCYVGGKWKANGPVITTTNPANNQTIAEVVEGSMEDYEEGLKACSEATKTWMQVPAPKRGEIVRQIGDALRAKLDHLGR LVSLEMGKILAEGVGEVQEIIDMCDFAVGLSRQLNGSIIPSERPNHAMLEMWNPLGIVGVITAFNFPCAVLGWNACLALVCGNCVVWKGAPTTPLVTIAM TKLIAEVLEKNNLPGAIFTSLCGGAEIGQAIAKDTRIPLVSFTGSSKVGQMVQQIVSQRFGKCLLELSGNNAIIVMDDADVQLAARSVLFAAVGTAGQRC TTCRRLLLHESIYKKVLDQLVEAYKQVKIGDPLEKGTLLGPLHTTESRKNFERGIELGGNILTGGSIIKSDGNFVQPTIVEVAPTVVAVKEELFAPVLYV MKFKTLQEAIDINNSVPQGLSSSIFTQKPETIFKWIGPLGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRSTCTINYGNELPLAQG INFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	0	1
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	1.4	0.9483
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10020070 [exp]	2.8	0.9293
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10010452 [exp]	3.5	0.9399
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	5.8	0.9412
AT3G50880			DNA glycosylase superfamily pr...		Lus10041749 [exp]	8.5	0.8809
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	8.5	0.9176
AT3G19990			unknown protein		Lus10017359 [exp]	11.4	0.8660
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	13.5	0.9267
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	14.8	0.9287
AT4G30790			unknown protein		Lus10005509 [exp]	15.6	0.9207

Compare expression of checked genes

Lus10008117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.