Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72510 148 / 4e-46 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT2G09970 130 / 4e-39 Protein of unknown function (DUF1677) (.1) AT5G20670 111 / 1e-31 Protein of unknown function (DUF1677) (.1) AT3G22540 93 / 7e-25 Protein of unknown function (DUF1677) (.1) AT4G14819 88 / 5e-23 Protein of unknown function (DUF1677) (.1) AT1G54095 88 / 2e-22 Protein of unknown function (DUF1677) (.1) AT1G79770 86 / 1e-21 Protein of unknown function (DUF1677) (.1) AT5G25840 84 / 6e-21 Protein of unknown function (DUF1677) (.1) AT2G25780 77 / 3e-18 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013156 [exp] 263 / 2e-91 AT1G72510 157 / 2e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10037683 [exp] 157 / 3e-49 AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10015670 [exp] 155 / 3e-49 AT1G72510 139 / 7e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10011427 [exp] 96 / 2e-25 AT5G25840 172 / 5e-55 Protein of unknown function (DUF1677) (.1) Lus10010564 [exp] 94 / 7e-25 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1) Lus10006107 [exp] 91 / 6e-24 AT3G22540 155 / 2e-50 Protein of unknown function (DUF1677) (.1) Lus10037569 [exp] 88 / 2e-22 AT5G25840 173 / 1e-55 Protein of unknown function (DUF1677) (.1) Lus10006044 [exp] 84 / 2e-20 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10000571 [exp] 84 / 2e-20 AT5G25840 174 / 9e-56 Protein of unknown function (DUF1677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166900 [exp] 171 / 7e-55 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.003G067800 [exp] 157 / 1e-49 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G219100 [exp] 124 / 4e-37 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G140600 [exp] 123 / 2e-36 AT5G20670 147 / 5e-46 Protein of unknown function (DUF1677) (.1) Potri.001G188700 [exp] 98 / 5e-26 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.003G050200 [exp] 97 / 1e-25 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.010G086000 [exp] 89 / 1e-23 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 87 / 1e-22 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.006G237300 [exp] 86 / 2e-21 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.015G031700 [exp] 76 / 2e-18 AT4G14819 75 / 5e-19 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10008118 pacid=23169779 polypeptide=Lus10008118 locus=Lus10008118.g ID=Lus10008118.BGIv1.0 annot-version=v1.0 ATGTCAGCAACAATGATAAGCGACCCAGTCACTTTAGTCCTCCCGGCGCCGGAGACTCAGCAGCCAGCAGCACCGCCGGCGGCGGTGGAGGTGGAATCCG CAAAATGCGACTGCTGCGGGCTGACGGAGGAATGCACGCCGGAGTACATCAAACGAATCAGAGAGAGACACTCCGGCAAGTGGGTCTGCGGACTTTGCAG CGAAGCGGTGAAAGACGAGATCTTCAGGAAAACAGAGGAGAAACTACTGATCAGCACCGACGAAGCTCTGGCGAGGCACATTAGTTTCTGCAAGAAATTC TCGTCTCCCGATCTTCCTCCGGTGGACCCCACCTTACATTTGATCTCGGCAATGAGGCAGATCCTTCGGAAGAGTTTCGATTCTCCGCCTCGTCCTCCGG TGATCCGATCCACTCCGGCGAGTCCGGTAGCGAAACGGCCGGCGGTGGCTAAGAAGTTCACCAGGTCTGACAGCTGCTTCTCGTCCCTCTCCGGTTGA
AA sequence Show only first row Show all	>Lus10008118 pacid=23169779 polypeptide=Lus10008118 locus=Lus10008118.g ID=Lus10008118.BGIv1.0 annot-version=v1.0 MSATMISDPVTLVLPAPETQQPAAPPAAVEVESAKCDCCGLTEECTPEYIKRIRERHSGKWVCGLCSEAVKDEIFRKTEEKLLISTDEALARHISFCKKF SSPDLPPVDPTLHLISAMRQILRKSFDSPPRPPVIRSTPASPVAKRPAVAKKFTRSDSCFSSLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	0	1
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	4.2	0.8762
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	5.5	0.8615
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	7.2	0.8479
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	8.4	0.8765
AT2G28720			Histone superfamily protein (....		Lus10017456 [exp]	9.9	0.8222
AT3G14240			Subtilase family protein (.1)		Lus10024814 [exp]	11.2	0.8554
					Lus10041677 [exp]	13.3	0.8495
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	13.9	0.8689
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10017584 [exp]	14.4	0.7970
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	15.9	0.8614

Compare expression of checked genes

Lus10008118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.