Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64180 174 / 1e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013157 [exp] 230 / 1e-78 AT5G64180 202 / 9e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022200 [exp] 187 / 1e-61 AT5G64180 179 / 2e-58 unknown protein Potri.015G005600 [exp] 182 / 2e-58 AT5G64180 144 / 1e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008120 pacid=23169749 polypeptide=Lus10008120 locus=Lus10008120.g ID=Lus10008120.BGIv1.0 annot-version=v1.0 ATGGAGGAGATTGGCGAAGAGAGATGGCAAGGAGCTATAGTGAATTTGTCAGAGATGACATCAAATTTGGAGTCTTTGCAGAAGCTACTTCTTAACAAGG CAGTGTTTGTTGATGAAGAAACTTACGCCAAAGCATCTCTCACTTCTGAACAAGCCCGCACCATTAAAGTTCTTGAACAAAGGGTAGAGACTTTGGAAAG AGAACTTGATGCTGCCATCTCAGCTGCAGCTCGTGCTCGTGCAGAGAAGCGACAAGCTGAAGTAGCACAAATGGCTGCCGAATTGCAGGCACAGCAAGTC ACCAAAGAACTTGAAAACACTACAAAGGTGTTTAAACTGCACATGGAGGAGTTGCGAGCAAAGCAAGAGGAGATAGCAAAGCGGGACAATGACATTAAAC TGTTGGAAGCAATAATCCAGACTTTGGGTGGAAGAGAATCTCATTCCTCAACTTGA
AA sequence Show only first row Show all	>Lus10008120 pacid=23169749 polypeptide=Lus10008120 locus=Lus10008120.g ID=Lus10008120.BGIv1.0 annot-version=v1.0 MEEIGEERWQGAIVNLSEMTSNLESLQKLLLNKAVFVDEETYAKASLTSEQARTIKVLEQRVETLERELDAAISAAARARAEKRQAEVAQMAAELQAQQV TKELENTTKVFKLHMEELRAKQEEIAKRDNDIKLLEAIIQTLGGRESHSST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64180			unknown protein		Lus10008120 [exp]	0	1
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	3.5	0.8859
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	4.0	0.8642
AT4G32930			unknown protein		Lus10005503 [exp]	5.7	0.8842
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010433 [exp]	6.0	0.8568
AT1G78790			unknown protein		Lus10042781 [exp]	10.7	0.7610
AT3G29130			unknown protein		Lus10038450 [exp]	10.8	0.7889
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	14.1	0.8427
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	15.5	0.8771
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	15.6	0.8166
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	15.7	0.8509

Compare expression of checked genes

Lus10008120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.