Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19110 732 / 0 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 718 / 0 unknown protein AT1G08050 51 / 3e-06 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 50 / 7e-06 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 50 / 7e-06 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 47 / 4e-05 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013159 [exp] 1445 / 0 AT1G19110 709 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10027666 [exp] 719 / 0 AT1G19110 874 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10039919 [exp] 719 / 0 AT1G19110 877 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10023527 [exp] 52 / 2e-06 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 51 / 3e-06 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068000 [exp] 994 / 0 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.001G166800 [exp] 987 / 0 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.018G062500 [exp] 772 / 0 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.008G038450 [exp] 51 / 4e-06 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 50 / 7e-06 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 46 / 9e-05 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 45 / 0.0002 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Lus10008122 pacid=23169751 polypeptide=Lus10008122 locus=Lus10008122.g ID=Lus10008122.BGIv1.0 annot-version=v1.0 ATGTACGAACTCTTTCCAGCCAAACAAAATTCGAATGGTCGCAAAAACCAAGGAAATAAATACCTTCCAACTTCAGGACTTCCACTCACACTCTGTCACT CTCTCCGACGACCGGAACCGGAGAACCGGAATTTTCTCCGTCCTGGTCGCTTCCCGCTTTCGTTAACCATGGCGGGAGAGTTCGAGACCTCCGTTGACCA CGGAATCAAGCTGTCCAAACGAATATACTACGGCAGAGACTCCGCCGCAGTTCCGGTGGCACCACCGGAGCTGGTTCGCGAGATGTCAAGGTCATCCATG AAGTCATCAACAGGGTACGACCAGCAGAGTAGCTACTTGCCTACCGCGGTGATGGTGTACGCGGTGGTCACGGAGCCGGAGGCCGTGGACAACCCCGACG TTCCCAGCTACCAGCCGTACGTGCACGGCTGCTGCGATCCTCCCGCGCTGATCCCGCTCCACATGTACGGAGTGGAGATGGAAGTGGATTGCTGCTTGGA CTACGCGCGCGTGAGCGTTGGAGGACGGTGGCGCGTGCATTGCCTCAAGGGCGGCCGGACCTGCGATTGCCGCGTCGCGGTTCCGATGGGAGAGAAGATG CTCCGGTTTCTGTTCGATGAAATGCCTCTGAAGGGATGTTGGCTAAAATCACTAATAGCAGAGCAGGGTACAATTCTGAGTGTAGAGGTCGAAGTGGCGG GAAGACTGTACCATAGCCAATTGATGAATGCTGATGATGCAGAGGAGTTTGCTAAAACGAGTAAAGCATCATCATCTGGAGATGGGCGCTTCTTGAAAGG CAGCATTTACACTTTCAGAATTCCGCAGGTTGCAGGGGGATCTACTGTTTCAGTGAAAGTGGGCTGGTCGCAGAAGTTGGTATACCAAAGAGGCCAATTC AGTCTGGAATTGCCATTTAGTTTTCCAGCATATGTGAATCCACCAGTTGTTAGCAAGACGTCCAAAAGAGAGAAGATACTGTTGAACGTCATCTCTGGTT TCAGCGATGAAATCACGTGCAGTTGCAGTAGCCATGCCCTGAAGGAGCTAAGGAGGGAAGTTGGTAAAATGGGCTTCTTTTATGAATCGGAAGTTAAGAC TTGGTCGGTTTCCAACTTCAGTTTTTCATACACAGTATGTTCTGAGGACTTGTTTGGTGGTGTGCTCTTGCAGTCTCCATATTTGAGAGATTTCGAGGAA AGGCAGATGTTCTGTTTGCATCTCTTCCCTGGAAATAACCAAACCAGGAAGGCTTTTAGGAGGGAGGTGGTATTTTTAGTTGATATAAGCGGAAGCATGA AAGGAGATCCTCTTGAAAACACCAAATCTGCAATATCGTCATCATTGTATAAGCTCAACGAGGAGGATTCTTTCAACATTATTGCTTTCAACGGGGAGAT GTACATATTCTCATCCTTGATGAAGCCAGCAACCCAAGAAACGGTGACCAAAGCTAACGAATGGCTTAATGAAACCTTGGTTGCACAAGGGGGGACGGAT ATTTTGCCTCCTCTTGAACAGGCTATGAAGCTCTTGGCTGAAACTACCAACTCAATTCCACTCATTTTCCTCATCACGGATGGGACTGTTGAAGATGAAA GAGACATCTGCCAATTCGTCAAAGCTTCATTAACAAAAGCAACTGGAGCCTCAATTTCTCCTCGCATATGTACATTTGGCATAGGTGCGTACTGCAATCG CTACTTCTTGCAAATGCTGGCCCAAATCACTAAGGGTCATTTCGATAATGCTTTCGACGCAGATTCAGTTGATTCTCGGCTACAAAGACTATTCACCACT GCCTCATCTGTTGTAATGGCAAATGTAAGCATGAATTGTCTGGAACATCTAGATTCACTCGAGTTGCTCCCGTATAGTATTCCAGATTTAACAGCTGGAG GAGCTCCATTGATGGTATCTGGAAGATGTGATGGGATTTTTCCAGAGTTGGTCAAAGTCACAGGGACTTGGTCAGATATGACCAGTTTCACCATGGAGGT TAAAGTGAAAAGGACAAAAGATTTGCCACTGGATAGAGCTCTTGCTAGGACGCAGATTGATTTGCTAACTGCTACGGCATGGCTATCACAAAATAAGGAC CTTGAGGAGAAGGTAGCGAAAATGAGCATACAGAAAGGGGTTCCATCAGAATACACCCGTATGGTCTTGATCCACACTGACAAAGGAGAGAAACCCCCAG AGACACACATGGTTACAGAGGTGTTCACCAAACTGAACTCAATGAGGCAGACAAAGGAAGCAGTGGACATTAACATCCTCCTAGGGAACTTAGGCACTGG TTTCGGCGACCTGGCCGCGACTTCTCGGAACACTCCTCCGGGGAGTGACGAGAAGAAGCCGCAAGATGCAGGGGAGAAGCTGGCTAAGGCTGCTGCGAAA TGTTGCGGTAGGGTGACGGATCGAGTGTGCTGTTTGTGCTTCATCAATGCTTGTTCATACACCAGCAACCAATGCTCCATTGTGTTCTCTCAAATCTGTG CTGCTCTCGCTTGCTTTGAGTGCATCAGCTGCTGCTATGAGCTTTGTGCTTGTGAATAG
AA sequence Show only first row Show all	>Lus10008122 pacid=23169751 polypeptide=Lus10008122 locus=Lus10008122.g ID=Lus10008122.BGIv1.0 annot-version=v1.0 MYELFPAKQNSNGRKNQGNKYLPTSGLPLTLCHSLRRPEPENRNFLRPGRFPLSLTMAGEFETSVDHGIKLSKRIYYGRDSAAVPVAPPELVREMSRSSM KSSTGYDQQSSYLPTAVMVYAVVTEPEAVDNPDVPSYQPYVHGCCDPPALIPLHMYGVEMEVDCCLDYARVSVGGRWRVHCLKGGRTCDCRVAVPMGEKM LRFLFDEMPLKGCWLKSLIAEQGTILSVEVEVAGRLYHSQLMNADDAEEFAKTSKASSSGDGRFLKGSIYTFRIPQVAGGSTVSVKVGWSQKLVYQRGQF SLELPFSFPAYVNPPVVSKTSKREKILLNVISGFSDEITCSCSSHALKELRREVGKMGFFYESEVKTWSVSNFSFSYTVCSEDLFGGVLLQSPYLRDFEE RQMFCLHLFPGNNQTRKAFRREVVFLVDISGSMKGDPLENTKSAISSSLYKLNEEDSFNIIAFNGEMYIFSSLMKPATQETVTKANEWLNETLVAQGGTD ILPPLEQAMKLLAETTNSIPLIFLITDGTVEDERDICQFVKASLTKATGASISPRICTFGIGAYCNRYFLQMLAQITKGHFDNAFDADSVDSRLQRLFTT ASSVVMANVSMNCLEHLDSLELLPYSIPDLTAGGAPLMVSGRCDGIFPELVKVTGTWSDMTSFTMEVKVKRTKDLPLDRALARTQIDLLTATAWLSQNKD LEEKVAKMSIQKGVPSEYTRMVLIHTDKGEKPPETHMVTEVFTKLNSMRQTKEAVDINILLGNLGTGFGDLAATSRNTPPGSDEKKPQDAGEKLAKAAAK CCGRVTDRVCCLCFINACSYTSNQCSIVFSQICAALACFECISCCYELCACE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10008122 [exp]	0	1
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10013159 [exp]	6.7	0.7766
					Lus10009048 [exp]	16.2	0.7569
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	22.0	0.6842
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	23.0	0.6797
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	27.4	0.7003
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	30.0	0.6729
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	34.5	0.6796
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000161 [exp]	42.0	0.6275
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008020 [exp]	42.4	0.6520
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10035008 [exp]	43.5	0.6201

Compare expression of checked genes

Lus10008122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.