Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72490 191 / 3e-59 unknown protein AT1G17400 179 / 2e-54 unknown protein AT1G19115 74 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013160 [exp] 406 / 2e-143 AT1G72490 202 / 1e-63 unknown protein Lus10037689 [exp] 267 / 2e-88 AT1G72490 246 / 9e-81 unknown protein Lus10015679 [exp] 265 / 3e-86 AT1G72490 239 / 1e-76 unknown protein Lus10039921 [exp] 53 / 7e-08 AT1G17400 80 / 2e-18 unknown protein Lus10027660 [exp] 49 / 1e-06 AT1G17400 81 / 5e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068300 [exp] 254 / 5e-84 AT1G72490 279 / 2e-94 unknown protein Potri.001G166700 [exp] 250 / 2e-82 AT1G72490 269 / 2e-90 unknown protein Potri.006G140100 [exp] 127 / 1e-34 AT1G72490 143 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008123 pacid=23169728 polypeptide=Lus10008123 locus=Lus10008123.g ID=Lus10008123.BGIv1.0 annot-version=v1.0 ATGCAAACCAAGCTAAGTGGCAAACAAGGAAACACTACTATTAAAAAATCAAGCACAATTGCTCCATCTTCTCATTCCAAGAGCCAAGAGTGTAGAGAGG AATTTAGTGATTGGCCACATGGGTTACTAGCAATTGGCACCTTTGGCATCAAAGACACCACCACCACCACCACCAATGATGATGAAGATATCCAACAAGT TGTTGATGAGGTATGTGACAAAGATCCCATGTCTTTCCTCGATGATTTCCAAGATTTTGATCCTGAAGAGATCGAGAAGTTGCAAAAGGAGTTGAACAAC TTGCTGACGCACAAGTCAAACTCAAAAAAGGAGAAGGAGGTTGTTGCAGACTTTCCACTGGACAGATTTTTGAACTGTCCGTCAAGTTTGGAGATTGACA GGAGGCTGGGCACAGAAGTCACTGATAGTCATAGTGGTTCATCGGTCGGACAACACAATGATGACAAGGAGGAAGATGACATTGAGAGGACGATTAGTGT CATACTTGACAAATGTAAAGACATTCGAGCTAAGAAGAAAGAAAATAAGACCATCGGGAAGAAATCGATTTCTTTCCTTCTCAAGAAGATGTTTGTTTGT TCAAGTGGGTTTGCTCCTCAACCTAGCTTGAATGATACTTTCGGCGAGTCACGAATGGAGAAGCTTCTAAGAACATTGATGCACAAGAGAATGAGCCCTC AAAATGGTGCATCCTCCGTGAATAAATGCATCAACCACAAGCAACAAGGAGAAAACGAGGGGCAAAACCGTCAGAAAACTAAGGACGATCATGAATATTG TAGCAAATGGGTGAAAACTGATTCTCAATTGCTCATTCGTGTGGTAATCTTACCTATACATTGCAGAAATGTGAACGCCGAGATGGGACTTGGGAGAATT AAGGGCGCTACTCGAGAAGTAAAATGGGTCCACTATGCCATTTGA
AA sequence Show only first row Show all	>Lus10008123 pacid=23169728 polypeptide=Lus10008123 locus=Lus10008123.g ID=Lus10008123.BGIv1.0 annot-version=v1.0 MQTKLSGKQGNTTIKKSSTIAPSSHSKSQECREEFSDWPHGLLAIGTFGIKDTTTTTTNDDEDIQQVVDEVCDKDPMSFLDDFQDFDPEEIEKLQKELNN LLTHKSNSKKEKEVVADFPLDRFLNCPSSLEIDRRLGTEVTDSHSGSSVGQHNDDKEEDDIERTISVILDKCKDIRAKKKENKTIGKKSISFLLKKMFVC SSGFAPQPSLNDTFGESRMEKLLRTLMHKRMSPQNGASSVNKCINHKQQGENEGQNRQKTKDDHEYCSKWVKTDSQLLIRVVILPIHCRNVNAEMGLGRI KGATREVKWVHYAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72490			unknown protein		Lus10008123 [exp]	0	1
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	27.8	0.7629
AT4G12840			Protein of unknown function (D...		Lus10008748 [exp]	28.0	0.7571
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10012508 [exp]	55.7	0.6710
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	95.2	0.7179
					Lus10010382 [exp]	102.4	0.6860
AT5G52450			MATE efflux family protein (.1...		Lus10019492 [exp]	114.9	0.6955
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016918 [exp]	141.0	0.6708
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	217.0	0.6764
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	225.4	0.6736

Compare expression of checked genes

Lus10008123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.