Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72480 720 / 0 Lung seven transmembrane receptor family protein (.1) AT2G01070 523 / 0 Lung seven transmembrane receptor family protein (.1.2) AT1G61670 469 / 2e-161 Lung seven transmembrane receptor family protein (.1) AT1G10980 325 / 3e-105 Lung seven transmembrane receptor family protein (.1) AT5G18520 44 / 0.0002 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013162 [exp] 1036 / 0 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10005732 [exp] 546 / 0 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10036166 [exp] 545 / 0 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10030521 [exp] 483 / 1e-166 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 476 / 3e-164 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10025135 [exp] 295 / 6e-95 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1) Lus10025219 [exp] 219 / 2e-68 AT1G61670 308 / 6e-104 Lung seven transmembrane receptor family protein (.1) Lus10025218 [exp] 194 / 3e-58 AT1G61670 303 / 2e-101 Lung seven transmembrane receptor family protein (.1) Lus10000821 [exp] 51 / 2e-06 AT5G18520 409 / 6e-140 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068500 [exp] 841 / 0 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G166500 [exp] 823 / 0 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 499 / 1e-173 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Potri.016G137700 [exp] 489 / 2e-169 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G109000 [exp] 478 / 4e-165 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10008125 pacid=23169729 polypeptide=Lus10008125 locus=Lus10008125.g ID=Lus10008125.BGIv1.0 annot-version=v1.0 ATGTTTAGATTACTGCTCAGATCAATGCAAAGTTTGTTCCTTTTCAGTGCTGCTGTGATTCTGTTCCCTGGATTTGCGGTTGAGGGTTCGGTCCACGAGT ACAAAGCGGAGAAATTTGTGAGCAGAGGGAATGCCTTTGTCGTCCATGGCGGCAGTGAAGGGATTTACTTCTCCCATCCTTCTAATCTCACCCTGAACGG CGATAAGGCTGCCAATGGAGATTCTTATATTCGCTTCGAGAAGGTTACATTCCGGAGGCCGGGGAAGTTGAATAACTATAGTTCAGGATTAGTTCAAGCT ATTGTGTTCGAAGTGGAAGACAGAGAGCTTATCGGTGGTTCGGCCTATGGTGGTCAAAGAGCAATCTGTTGTACTGCTGATCTCGCGAAACTAGGTGTGT GCGCACAAGGAGAGATTATCCATCGTCCTTCGACGACGAATCCAGGCTGGCCCCACGTACTCGGTGTCTCATTTAATGAAGATGAAGATGTGGCAACATT GCCATTAAGGTCCATCGAGATCACCAGAACTGGCATGTACAACTTATACTTCATGGTATGCGATCCGGCTCTTAAAGATGTGGTGGTGGAAGGAAAAACA ATATGGAAGAATCCCGGCGGTTACTTGCCGGGAAGAATGGCTCCGCTCATGAACTTCTACGCGTTCATGTCCGTTGCATTCGTGGTGCTCGGAGTCTTCT GGTTCTCGCAGTATGCTCGGTTTTGGAAAGAAGTCTTCCCGTTGCAGAACTGTATCACGGTAGTGATCACGTTGGGGATGTTCGAGATGGCGTTCTGGTA CTTTGACTATGCGGAATTCAACGAGACCGGAATTCGGCCAACTGGGACCACTGTATGGGCGGTCACGTTCGGTACTGTGAAACGTACAGTGGCACGACTT ATTATATTGATTGTTTCGATGGGATATGGCGTCGTGAGGCCTACGTTGGGAGGTCTTACGTCGAAGGTGCTGATGCTTGGAGGGACGTTCTTCTTTACAT CCGAAGTGCTCGAGTTGGTCGAGAATGTCGGTGCTGTGAGCGATTTTTCGGGGAAAGCTATACTCTTTTTGGTTCTACCTGTGGCCCTCCTGGATGCTTT CTTCATCCTGTGGGTGTTCAAGTCGCTTTCTGCTACATTAAATAAACTTCAGGCTAGAAGAATGATGGTGAAGCTGGATATATACAGGAAATTCACAAAT GCTTTGGCAGTAGCAGTGATTGTTTCAGTTGGTTGGATATGCTATGAGTTGTATTTCAAAGCGCACGACGTCTACAACGAACAGTGGCAGAATGCATGGG TGATCCCAGCTTTCTGGCAATTCCTCTCATTCTCCCTCCTCTGTGTCATCTGTGCCCTTTGGGCACCCTCTCAAACCTCCATGAGGTACTCTTACTCCGA CGACGCCAGCGAAGAGTTCGACAGAGACGAGGGCTCTCTTCGACTCATCAAACCATCCTCCTTGCCTACGAAAGACGTCCGATCAGAACCCAGATCAACG GTTACAATCACCACCAACGGAGGAGCATCAGGCAGCATCCCAGAAGAAGAGAAGACAGCCTGA
AA sequence Show only first row Show all	>Lus10008125 pacid=23169729 polypeptide=Lus10008125 locus=Lus10008125.g ID=Lus10008125.BGIv1.0 annot-version=v1.0 MFRLLLRSMQSLFLFSAAVILFPGFAVEGSVHEYKAEKFVSRGNAFVVHGGSEGIYFSHPSNLTLNGDKAANGDSYIRFEKVTFRRPGKLNNYSSGLVQA IVFEVEDRELIGGSAYGGQRAICCTADLAKLGVCAQGEIIHRPSTTNPGWPHVLGVSFNEDEDVATLPLRSIEITRTGMYNLYFMVCDPALKDVVVEGKT IWKNPGGYLPGRMAPLMNFYAFMSVAFVVLGVFWFSQYARFWKEVFPLQNCITVVITLGMFEMAFWYFDYAEFNETGIRPTGTTVWAVTFGTVKRTVARL IILIVSMGYGVVRPTLGGLTSKVLMLGGTFFFTSEVLELVENVGAVSDFSGKAILFLVLPVALLDAFFILWVFKSLSATLNKLQARRMMVKLDIYRKFTN ALAVAVIVSVGWICYELYFKAHDVYNEQWQNAWVIPAFWQFLSFSLLCVICALWAPSQTSMRYSYSDDASEEFDRDEGSLRLIKPSSLPTKDVRSEPRST VTITTNGGASGSIPEEEKTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	0	1
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	1.0	0.9798
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	1.4	0.9518
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	2.8	0.9361
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	3.5	0.9248
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	4.2	0.9349
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10033135 [exp]	4.7	0.9268
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	4.9	0.9389
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	6.3	0.9305
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	7.0	0.9314
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	7.1	0.9352

Compare expression of checked genes

Lus10008125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.