Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14090 765 / 0 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 742 / 0 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 665 / 0 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 421 / 8e-139 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G03540 358 / 2e-116 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 359 / 2e-115 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G58430 348 / 3e-111 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT3G29400 342 / 2e-108 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G13150 340 / 1e-107 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 333 / 1e-104 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013163 [exp] 879 / 0 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 416 / 1e-137 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10016764 [exp] 413 / 9e-136 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10031956 [exp] 384 / 2e-124 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 382 / 1e-123 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 346 / 4e-110 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10004917 [exp] 340 / 8e-108 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 338 / 4e-107 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10041536 [exp] 341 / 2e-106 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166400 [exp] 944 / 0 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 926 / 0 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 428 / 1e-141 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 426 / 7e-141 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 380 / 3e-123 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.017G068000 [exp] 372 / 2e-119 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.008G017800 [exp] 367 / 3e-118 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 363 / 6e-117 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.019G124000 [exp] 360 / 1e-115 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.013G152900 [exp] 359 / 2e-115 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10008126 pacid=23169739 polypeptide=Lus10008126 locus=Lus10008126.g ID=Lus10008126.BGIv1.0 annot-version=v1.0 ATGGGTTCGCCGGAGGAGATGAACAGCGGCGGGGGTAGCAGCAGCAACAGCGGCGGCTTTGATTTCGAAGAAGCACAGAAGATAATACTGAGATGGGACA CGTCAGCATCGGAGGAAGCGAGGGAGAAGATGGTGTTTGCTGGCGACCGTCAAGAAGTGGATCTCTATCTGCAGGCAGTTGACGAAATCCAGAAGTCGAT GTCCTCTGCTTCAATCTCCGCCGCCGACGGAGGCAGCGGCGGAGGAGTTCAAGACCAGCTTCAAGATAAAGTCAACTCCGCCATCCAGATCGCCATGGCT CGTCTGGAAGACGAGTTCCGTAACATCTTACTCGGCCATACTTCCCCGATCGAGGAAGACGCTCTCACTACCGACAACCCTGGCTCATCCTCCTCTTCCT TCCACCACGCCGCTGCCGGCGACGCAGATTCCGAATTCGGCGAAGACGACCGCGACCGCCTCTCCGGAGGCGGCGGAAGTGGCATCTCAGTCGGCGATGA GCCATCCGATCTCCAGCTCTCAGATCCAATCACTCGAACCGGCTCGTCGTTTAGCAACAGCAACTCTTCCTCCAGCTACCGAACTACAAGCAGCATCAAA GAGCTCGATCTGATCCCTGAGGAAGCAGTCGTAGACCTCCGCTGCATAGCGCAGCGGATGATCTCCGCCGGATACCTCCGTGAGTGCATCCAAGTGTACG GAAGCGTCCGTAAATCCGCCGTCGATTCCAGCTTCCGCCGGCTAGGAATCGAGAAGCTCAGCATCGGAGATATCCAGCGGCTGGAGTGGGACGCACTGGA GAGCAAGATCCGCCGCTGGATTCGCGCCGCCAAAGTCTGCGTCAGAATCTTATTCGCCTCCGAGAAGAAGCTCTGCGAGCAGATTTTCGAATCGGTCGGA TCCTCCGTCGACGACGCTTGCTTCGTCGAGACAGTGAAAGGCCCCGCCGTGCAGCTCTTCAACTTCGCCGAAGCAGTAAGCATCAGTAGAAGATCGCCGG AAAAAATGTTCAAGATCCTCGATCTGCACGACGCCCTGGTCGATCTGATGCCCGATATCGAATCCGTCTTCGGTTCGAAATCAGCTGATTCGATCCGAGT CCAGGCAGCCGAGATCTTATCAAGACTGGCCGAAGCCGCTAGAGGAATACTATCCGAATTCGAAAATGCTGTTCTTCGAGAGCCTTCGAAAGTTGCAGTC CCTGGAGGAACGATCCATCCATTAACAAGGTATGTAATGAACTACATCAGCTTGATTTCGGATTACAAGCAGACGTTAATCGAACTTATAATGTCGAAGC CATCGACCGGTTCGAGATACTCGGGCGATCCAACCACACCGGACATGGAATTCGCCGAACTGGAAGGAACCAAAACTCCACTAGCCTTACATTTGATTTG GATCATTGTGATTCTGCAATTCAATCTAGATGGGAAATCCAAGCTTTACAAAGATACATCATTAGCACATTTGTTCTTGATGAACAATGTTCATTACATT GTTCAAAAGGTGAAAGGCTCGGCCGAACTTAGAGAAATGATCGGAGACGATTATCTGCGGAGGCTGACTGGGAAATTCCGGCAGTCTGCGACGAATTACC AGAGAGCAACATGGGTAGGGGTTTTGTATTGCTTGAGAGATGAAGGTTTGCACGTCAGTGGGAGTTTTTCATCCGGTGTTTCGAAGAGTGCTTTGAGGGA GAGGTTTAAGAGCTTCAATGCTATGTTTGAAGAAGTTCATCGGACTCAAGCTACGTGGTTGATCCCGGATACGCAGCTTCGCGAGGAGCTAAGGATTTCA ATCTCGGAGAAGTTGCTTCCGGCTTATCGGTCTTTCTTGGGACGGTTCAGGAGTCATATCGAGAGCGGTAGGCATCCGGAGAACTATATCAAGTATTCTG GGGAGGATCTGGAGAGTGCCGTCTTGGATTTCTTCGAAGGGTGTCCCGTTTCGCAGCATTCGAGGAAGAGATCTCAGTGA
AA sequence Show only first row Show all	>Lus10008126 pacid=23169739 polypeptide=Lus10008126 locus=Lus10008126.g ID=Lus10008126.BGIv1.0 annot-version=v1.0 MGSPEEMNSGGGSSSNSGGFDFEEAQKIILRWDTSASEEAREKMVFAGDRQEVDLYLQAVDEIQKSMSSASISAADGGSGGGVQDQLQDKVNSAIQIAMA RLEDEFRNILLGHTSPIEEDALTTDNPGSSSSSFHHAAAGDADSEFGEDDRDRLSGGGGSGISVGDEPSDLQLSDPITRTGSSFSNSNSSSSYRTTSSIK ELDLIPEEAVVDLRCIAQRMISAGYLRECIQVYGSVRKSAVDSSFRRLGIEKLSIGDIQRLEWDALESKIRRWIRAAKVCVRILFASEKKLCEQIFESVG SSVDDACFVETVKGPAVQLFNFAEAVSISRRSPEKMFKILDLHDALVDLMPDIESVFGSKSADSIRVQAAEILSRLAEAARGILSEFENAVLREPSKVAV PGGTIHPLTRYVMNYISLISDYKQTLIELIMSKPSTGSRYSGDPTTPDMEFAELEGTKTPLALHLIWIIVILQFNLDGKSKLYKDTSLAHLFLMNNVHYI VQKVKGSAELREMIGDDYLRRLTGKFRQSATNYQRATWVGVLYCLRDEGLHVSGSFSSGVSKSALRERFKSFNAMFEEVHRTQATWLIPDTQLREELRIS ISEKLLPAYRSFLGRFRSHIESGRHPENYIKYSGEDLESAVLDFFEGCPVSQHSRKRSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	0	1
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	3.9	0.8742
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	5.0	0.8425
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	6.9	0.8912
					Lus10018552 [exp]	10.0	0.8751
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10001811 [exp]	10.4	0.7873
AT2G26530		AR781	Protein of unknown function (D...		Lus10032881 [exp]	11.0	0.8763
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	11.0	0.8810
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	11.4	0.8412
					Lus10039781 [exp]	12.1	0.8719
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	12.3	0.8074

Compare expression of checked genes

Lus10008126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.