Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11040 1730 / 0 AtTRS120 TRS120 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013164 [exp] 2113 / 0 AT5G11040 1683 / 0.0 TRS120 (.1) Lus10002132 [exp] 47 / 1e-05 AT1G79440 56 / 9e-10 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022500 [exp] 1830 / 0 AT5G11040 1758 / 0.0 TRS120 (.1) Potri.006G259500 [exp] 1807 / 0 AT5G11040 1761 / 0.0 TRS120 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08626 [flax] [poplar] TRAPPC9-Trs120 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
Representative CDS sequence Show only first row Show all	>Lus10008127 pacid=23169748 polypeptide=Lus10008127 locus=Lus10008127.g ID=Lus10008127.BGIv1.0 annot-version=v1.0 ATGGAGCCGGACGTCAGCATCGAGACATCGTGCATGATCCGGATCGCGGTTCTCCCAGTGGGCACAGTCCCGGCGAGTGTCCTCCGTGATTATTTCTCAA TGTTCACCCGCCACAATACGATTCCGCTCTCGGCAATCAGCTCTTTCTACACTGAGCACCATAAATCCCCTTTCGCACTCCAGCCGTGGGACACTGGATC CATCCGCTTCAAGTTCTTGCTCGGCGGGGCTCCTGCTAGCCCCTGGGACGACTTCCAGTCCAACAGGAAGATTCTCGCCGTCATCGGCCTCTGTCACTGC CCTTCCTCGCCTGATCTCGATTCAGCAGTCGAGCAATTCACCGCCGCCTGTAAGAGTTACTCATCAGCATTGGTCCAACGGTGCTTCGCTTTCTGTCCTT GTGATTCTCAGTTGGAAGACGGTGTGAAGAAAGAGGATGTTCTCAGATTGTTCCCTCCTGCTGATCAGCAAACGCTGGATATCCATCTCCAGACCATGAT GCAGGAAATCGCGGCTTCCTTGCTCATGGAGTTTGAAAAGTGGGTGCTTAAGGCTGAATCTGCTGGAACTATCCTCAAGACGCCTTTGGATTCTCAAGCC AGTCTCAGTTCAGAAGAGGTTATCAAGGCCAAAAAGAGAAGACTTGGCCGAGCCCAGAAGACCATTGGGGATTACTGTTTGTTGGCTGGATCACCAGTTG ATGCTAGTGCTCATTATTCTACTGCATTAGAGCTTGCCAGGCTGACCGGAGATTTGTTCTGGTATGCTGGTGCCCTTGAGGGCAGCGTTTGTGCTTTACT GATTGATCGTGTCGGCCACGTCGATGCAGTATTAGTGGACGAAGTTAAGTATCAATACAACACTGTGATAATGCAGTATAGGAAGTCATTTATCCAAGAC AATGCTCAAAGAGTGTCTCCTTTGAGCTTTGAACTTGAAGCTACTTTAAAGTTAGCAAGATTTCTCTGCAGAAGAGAGCTGGCCAAGGATGTTGTGGAGT TGTTGACCAGTGCTGCAGATGGTGGAAAATCTTTAATTGATGTTAATGATAGACTTGTTCTATATGTTGAAATTGCTCGGTTATTTGGGACACTTGGTTA CCAGAGGAAGGCTGCCTTTTTCTCAAGGCAGGTTGCACAATTGTATCTTCAACAAGACAACAGGTTGGCTGCTACAAGTGCTATGCAAGTGTTAGCGATG ACTACAAAAGCATATCGTGTTCAGAGCAGAGCATCAGTATCAGATCCTCAAACAAAAAAACAAACTGGGCCGAGTCATACTGATAGTGGGAAAATGAATC ATCACTTGATCGTGTCGTTATTTGAATCACAATGGAGCACGCTGCAGATGGTAGTGTTGAGAGAGATACTGCTATCTGCTGTTAGAGCAGGTGATCCACT TGCTGCATGGAGCGCTGCTGCTCGGCTACTGAGACAATACTATCCACTAATTACGCCACCAGGACAGAATGGCCTTGCTAGTGCCCTGAATAACTCAGCT GAAAGGCTACCTTCTGGAACTCGCTGTGCTGATCCTGCTTTGCCTTTTGTGAGGCTGCATTCTTTTCCACTTCATCCATCTCAAATGGACATTATCAAGC GGAATCCGGGTAGAGAAGATTGGTGGGCTGGATCTGCTCCTTCAGGACCTTTTATTTATACCCCATTCAGCAAAGGGGAGGTAAATGATACTAGCAAGCA GGAGCTGGTTTGGATTGTCGGAGAACCAGTTCAGGTTTTGGTGGAGCTTGCAAACCCATGCGGCTTTGATTTGAGGGTTGATAGTATATATCTGACTGTG CATTCAGGTTGCTTTGATGCTTTCCCAATAAGTGTGGATCTTCCACCCAACTCTTCAAAGGTGATCACCTTATCTGGAGTTCCGACTGCCATGGGGCCAG TAACAATCCCAGGATGTACTGTTCATTGCTTTGGTGTCATCACAGAACATCATTTCAGGGATGTCGATAACCTGCTCCTTGGGGCAGCACAAGGACTTGT ACTTTCTGATCCTTTCAGATGCTGTGGATCTGCCAAGTTGAGAAATTTTTCTGTTCCACGAATTTCTGTAGTGCAACCCTTGCCATTACTAGTCTCGCAG GTTGTAGGCGGTGATGGGGCCATAATTTTGTATGAAGGTGAAATACGTGATATTTGGATAAGCCTCTCAAATGCAGGAACTGTTCCAGTTGAGCAAGCAC ATATATCCCTCTCTGGAAAGAACCAAGATTCCATCATCTCAATACCTTATGAGACCTTAAAATCTGTTCTTCCATTGAAACCTGGAGCAGAGGTGATCCT ACCACTGACTTTGAAAGCCTGGAAGCTCAGTCAAATTGACCTCGATATTGGTGCTGGAAGAGCAATCTCTGGAAGCATTGGACGGCAGTTTAAGGATGCT AGTGGTCCTACTTTATTGATCCATTATGCAGGGCCATCGACAGATTATCTAGATATTGCTACGAAAGGTTCTACTTTGCCTCCAGGAAGACGCTTGGTTC TCCCGTTGCATGTTTGTGTGTTGCCAGGTATGTCTCTTGTAAAAGCTCGTCTGCTGTCAATGGAAATTCCAGCACATATCGGAGGTGATCATCCTAAACT TGTTCCTGAGGGGCATGATAAGCCTAGCAAAGAAGTAACAGAGTCCGAAAGGAAGATAGAGAGATTGGTGAAGATTGACCCTTACAGAGGAAGCTGGGGA TTGCGGTTTCTAGAACTAGAATTGTCTAATCCAACCGACGTGGTGTTTGAGATTGGTGTTTCTGTTCAGCTGGATGACAGTGAGGATAACCCTTGTGTTG ATGAAGATGGTGAGTATGGTTATCCAAAAACTAGGATCGATCGGGACTATTCTGCAAGGGTTCTGATACCACTAGAGCACTTTAAATTGCCTATCCTTGA TGATTCCTTTTTCATGAAGGAATTTCTGAACGCGGGTTCATCAACTAGTAGTAGCAGAAGTCCAACATTCTCCGAAAGGAACACAAAAGCTGAATTGAAT GCTTCAATTAAGAGCCTGATATCAAGAATAAAAGTCAGGTGGCATTCGGGAAGGAACAGCTCTGGGGAATTGAATATTAAGGATGCTGTACACACTGCAC TTGAGACATCAGTTATGGACGTCTTGCTTCCAGATCCATTAACGTTCGGTTTTAGGCTTACCCGGAGCAGCGAAGAACCATCCGATGACTCGTCAGTCTC CAAAGATTCTTCTGTGTTGGCAAATGACATGACTCCAATGGAGGTTCTCGTCCGCAACAATACAAAGGAAGCGATCAAGATGAGTCTCGGTATCACTTGT AGGGATGTAGCTGGTGAGAATTGCGTCGAAGGTGGGAAGTCTACTGTTCTTTGGGCCGGAGTGTTGAATGGGATAACAATGGAGGTTCCGCCTTTGAAAG AATCAAAGCATGAGTTTTCGCTGTATTTCCTGGTGCCAGGGGAGTACACATTGGTGGCTGCTGCAGTGATAGAAGATGCAAATGATGTGCTGAGAGCTCG TGCTAAAACCCAGTCACCAGAGGAGCCGATCTTTTGTCGAGGCCCTCCCTTTCATGTTCGTGTCTTGGGGACTGCATGA
AA sequence Show only first row Show all	>Lus10008127 pacid=23169748 polypeptide=Lus10008127 locus=Lus10008127.g ID=Lus10008127.BGIv1.0 annot-version=v1.0 MEPDVSIETSCMIRIAVLPVGTVPASVLRDYFSMFTRHNTIPLSAISSFYTEHHKSPFALQPWDTGSIRFKFLLGGAPASPWDDFQSNRKILAVIGLCHC PSSPDLDSAVEQFTAACKSYSSALVQRCFAFCPCDSQLEDGVKKEDVLRLFPPADQQTLDIHLQTMMQEIAASLLMEFEKWVLKAESAGTILKTPLDSQA SLSSEEVIKAKKRRLGRAQKTIGDYCLLAGSPVDASAHYSTALELARLTGDLFWYAGALEGSVCALLIDRVGHVDAVLVDEVKYQYNTVIMQYRKSFIQD NAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGGKSLIDVNDRLVLYVEIARLFGTLGYQRKAAFFSRQVAQLYLQQDNRLAATSAMQVLAM TTKAYRVQSRASVSDPQTKKQTGPSHTDSGKMNHHLIVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRQYYPLITPPGQNGLASALNNSA ERLPSGTRCADPALPFVRLHSFPLHPSQMDIIKRNPGREDWWAGSAPSGPFIYTPFSKGEVNDTSKQELVWIVGEPVQVLVELANPCGFDLRVDSIYLTV HSGCFDAFPISVDLPPNSSKVITLSGVPTAMGPVTIPGCTVHCFGVITEHHFRDVDNLLLGAAQGLVLSDPFRCCGSAKLRNFSVPRISVVQPLPLLVSQ VVGGDGAIILYEGEIRDIWISLSNAGTVPVEQAHISLSGKNQDSIISIPYETLKSVLPLKPGAEVILPLTLKAWKLSQIDLDIGAGRAISGSIGRQFKDA SGPTLLIHYAGPSTDYLDIATKGSTLPPGRRLVLPLHVCVLPGMSLVKARLLSMEIPAHIGGDHPKLVPEGHDKPSKEVTESERKIERLVKIDPYRGSWG LRFLELELSNPTDVVFEIGVSVQLDDSEDNPCVDEDGEYGYPKTRIDRDYSARVLIPLEHFKLPILDDSFFMKEFLNAGSSTSSSRSPTFSERNTKAELN ASIKSLISRIKVRWHSGRNSSGELNIKDAVHTALETSVMDVLLPDPLTFGFRLTRSSEEPSDDSSVSKDSSVLANDMTPMEVLVRNNTKEAIKMSLGITC RDVAGENCVEGGKSTVLWAGVLNGITMEVPPLKESKHEFSLYFLVPGEYTLVAAAVIEDANDVLRARAKTQSPEEPIFCRGPPFHVRVLGTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	0	1
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	1.4	0.9298
AT4G24840			unknown protein		Lus10009908 [exp]	2.4	0.9293
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	3.5	0.9215
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	3.7	0.8970
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	4.5	0.9145
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009042 [exp]	4.6	0.8702
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	4.7	0.8699
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	4.9	0.8960
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	5.5	0.8988
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	5.7	0.8858

Compare expression of checked genes

Lus10008127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.