Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20690 300 / 2e-93 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 289 / 2e-89 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 229 / 6e-67 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 223 / 5e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 211 / 1e-59 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 208 / 1e-58 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 206 / 3e-58 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G35390 203 / 5e-57 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 196 / 2e-54 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 189 / 5e-52 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015678 [exp] 604 / 0 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 545 / 0 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 416 / 4e-139 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 394 / 4e-133 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 325 / 2e-102 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 291 / 2e-93 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1) Lus10034446 [exp] 266 / 1e-80 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10037687 [exp] 229 / 2e-70 AT1G72460 212 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 221 / 1e-63 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068800 [exp] 491 / 2e-167 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 414 / 9e-138 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 315 / 2e-98 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 240 / 2e-70 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G002600 [exp] 221 / 5e-64 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 217 / 2e-62 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 217 / 6e-62 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 211 / 1e-59 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 209 / 3e-59 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 201 / 2e-56 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008128 pacid=23169766 polypeptide=Lus10008128 locus=Lus10008128.g ID=Lus10008128.BGIv1.0 annot-version=v1.0 ATGGCCTTGGAATCCATCCTTTTTCACCTCTTCTTCTTCTTCCTCATCGCCACCTCCTCCGCCGTCGCCGTCGCCACCGTTTCCGACTCCGACGCCCTAC TCCGGCTCAAGAAATCCTTCCTAAACGACACCGCTCTCATCTCCTGGGACCCGGCCTCTCCCCCTTGCAAATCCAGGATCCGGTGGCATGGCGTCTTCTG CTCCAAGCACGGGAAGGTCACCGGCCTCCGCCTCGAGGACCTCGGATTATCCGGAGAGATCGACGTCGACGCGCTCCTCCAGATCCCCCGCCTCCGAACG GTCAGCTTCGCTAACAACTCCTTCTCCGGTGATATCCCGCGGATCAACCGGATCACCTACCTCAAGGCGGTTTACCTCACGGGGAACAACTTCTCCGGCC AGATCCCGTCGGGATACTTCCTCAAGATGGCGGCGTTGAAGAAGCTCTGCCTCGCTAAAAACGGCTTCTCCGGATTGATTCCGACTTCCCTCACCGTGGT CTCCAATCTGATCGTACTCCGCCTAGATAGCAACCGGTTCTCCGGGCAGATCCCTGACCTAGAGCTCAAGAAATTGAAGCGATTCGACGTTTCTAATAAC CCTAATTTGTTCGGCCAGATCCCTGAGGGGCTTGCCAAATTCAAATCCACGGCGTTCCGAGGAAACCCTGACCTCTGCGGCGAGGTAATCGCAAAGGAAT GCCAGCTTCCGGCCGAGAGCAAGGCAGCCGGGGCAGCCACGTCGTCGGAAGGGATCCAGAACAACCCTAACGCGACCGCCTCCGGGTTCCAAGTCTCGCC GCGGCCGGCGGTGGCGGTGGCGACGGCGGCGCGACTTCCGTCGGTCGATTCCGGCGTTGTGGCGCGGGGGAGGACTTCGAATGCTGCAGCGGCGGCAAAG GGAGGGGGGGTTGTGATGATTGACGAGGACAGGGGGGTTTTCGGGCTGTCGGCCGGAGGGACGGCGGTGGTGGTTAAGAGGATGAGGGAGATGAACGCTA TGGGGAAAGACGGGTTCGAATCGGAGATCAGAATGCTTGGGAAGCTACGACACCCGAACGTGCTGACGCCGTTGGCGTTCCATTACCGGAAGGACGAGAA GTTGCTCATCTACGAGTTCGTCCCCACCGGCAGCTTGCTCTTCTTGTTGCATGGTGAACGAGTGCAGGGGCATCCAGGATTGAACTGGGCAGCAAGACTC CGGATTGTAAAAGGAGTAGCTCGAGGGTTAACCTACATCCACTCGGAGCTGGCCGGCTCGAATATACCCCACGGAAACTTGAAATCCAGCAACATACTCG TAGGTCCTGACAACGAACCGAGGATTTCTGAGTACGGATTCAGCTCCTTAGTCAGCTCCGCAGTCATCTCGCAGGCATTGTTCTCATACAAAACCCCCGA AGCAACGACAGGTCACGTGTCCCCGAAATCCGACGTGTTCTGCCTCGGAATCCTCATCCTGGAAATCCTGACAGGAAAGCTTCCCTGCCAGTACTCCATC AGCGGAGCTGCGGGGGCGGATTTGGTCCAATGGGTGGGGTCGGCGGTAGGCGACGGGAAGGAAACGGAGTGCCTGGACCCTGAGATCGGAGGGTTGACGT CTTCGGTTGGACCGATGTTGAAGCTGATGGAGGTTGGGTTCCTCTGTTGCCGCGATGTTCCCGATGAGAGACTCGACCTGAGAGAAGCGGCGAGGAGGAT CGACGAGATACAGTTGGAGGACAGTAGTAGTTATACTTCGTGGTCGTTTTCGAATTCCTGA
AA sequence Show only first row Show all	>Lus10008128 pacid=23169766 polypeptide=Lus10008128 locus=Lus10008128.g ID=Lus10008128.BGIv1.0 annot-version=v1.0 MALESILFHLFFFFLIATSSAVAVATVSDSDALLRLKKSFLNDTALISWDPASPPCKSRIRWHGVFCSKHGKVTGLRLEDLGLSGEIDVDALLQIPRLRT VSFANNSFSGDIPRINRITYLKAVYLTGNNFSGQIPSGYFLKMAALKKLCLAKNGFSGLIPTSLTVVSNLIVLRLDSNRFSGQIPDLELKKLKRFDVSNN PNLFGQIPEGLAKFKSTAFRGNPDLCGEVIAKECQLPAESKAAGAATSSEGIQNNPNATASGFQVSPRPAVAVATAARLPSVDSGVVARGRTSNAAAAAK GGGVVMIDEDRGVFGLSAGGTAVVVKRMREMNAMGKDGFESEIRMLGKLRHPNVLTPLAFHYRKDEKLLIYEFVPTGSLLFLLHGERVQGHPGLNWAARL RIVKGVARGLTYIHSELAGSNIPHGNLKSSNILVGPDNEPRISEYGFSSLVSSAVISQALFSYKTPEATTGHVSPKSDVFCLGILILEILTGKLPCQYSI SGAAGADLVQWVGSAVGDGKETECLDPEIGGLTSSVGPMLKLMEVGFLCCRDVPDERLDLREAARRIDEIQLEDSSSYTSWSFSNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72460			Leucine-rich repeat protein ki...		Lus10008128 [exp]	0	1
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042321 [exp]	7.5	0.8743
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10025986 [exp]	9.2	0.8374
AT4G21865			unknown protein		Lus10023724 [exp]	11.0	0.8588
AT1G10800			unknown protein		Lus10037441 [exp]	13.9	0.8805
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	15.7	0.8771
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	19.9	0.8732
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	23.2	0.8689
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	23.4	0.8762
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10008771 [exp]	30.2	0.8666
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	30.6	0.8321

Compare expression of checked genes

Lus10008128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.