Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74950 100 / 3e-25 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G19180 99 / 2e-24 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G72450 85 / 4e-19 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT1G17380 72 / 1e-14 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT5G20900 66 / 7e-13 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT5G13220 54 / 1e-08 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G70700 50 / 3e-07 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT3G17860 48 / 4e-06 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 45 / 3e-05 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT3G43440 43 / 3e-05 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013166 [exp] 338 / 4e-118 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10039911 [exp] 110 / 2e-28 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 108 / 1e-27 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10011929 [exp] 48 / 2e-06 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10027639 [exp] 48 / 3e-06 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1) Lus10041986 [exp] 44 / 8e-05 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10017991 [exp] 44 / 9e-05 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10008101 [exp] 43 / 0.0002 AT4G32570 155 / 2e-43 TIFY domain protein 8 (.1) Lus10013138 [exp] 43 / 0.0002 AT4G32570 152 / 2e-42 TIFY domain protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068900 [exp] 128 / 2e-35 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.006G139400 [exp] 116 / 5e-31 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.001G166200 [exp] 110 / 9e-29 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.006G217200 [exp] 69 / 9e-14 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.003G165000 [exp] 54 / 1e-08 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.018G047100 [exp] 52 / 8e-08 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.001G062500 [exp] 50 / 2e-07 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.012G044900 [exp] 47 / 9e-06 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G035800 [exp] 45 / 2e-05 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 45 / 2e-05 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10008129 pacid=23169753 polypeptide=Lus10008129 locus=Lus10008129.g ID=Lus10008129.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCCGGTAATAGATACTCCACGGAGAGGCATAGCAGCGGTTCGGCGGGGAGTAGTTTCGCTCAGACTTGCAACCTTCTCAGCCAGTTTTTGA AGTCCGGTAAAGCGAATCTAGGAGATATCAGCCTCGCTGCTAAGCTCGATCATCATCAGAGCTTCAAATCAGGCGGAGCACCAACCGCGACGCTGAATCT TCTGCCGAGCATCGGAAACGACGACGGAAACTCGAAGAAAGCTAGAGATCTGATGGATTCGTTGCCGCGGTTTGTGGCGGCTGGATCTCCGGCTATGGAG ATTAAAGGCTCTGTTCTTCCTGCCCCAGCTCAGATGACGATTTTCTACGGAGGAAGAGTGATCGTGTTCGACGATTTCCCGGCGGAGAAAGCGAAGGAGG TTATGGCGTTGGCTTCTGGAAAAGGAGCGACCATCATCAACAACAACAACAACAATAGTAATTCGGCTGATGAGCGTAACGTTAACTCCTCAGCTTCAGC TGGATCCGGCGCGGCTTCCTCGTCGTCTTCTCCTGAAGCGAGCCACAACAACAACAACAACGGCGGTCAAATCGAGAGGCTACCTTTCCGGCCGCCTCAT CAGCCGATTCCTTCCGATTTGCCGATTGCCAGGAGGGCTTCGCTTCACCGGTTTCTGGAGAAGAGAAAGGACAGAGTTACATCCAGAGGACCGTATCATT TCCCAAGCTCGCCGGCGGCGGCGAAACCCGTCGGAGGTGCAGGGAGTAGTAATAATAAGAACAACCCGTGGCTTGATCGGCAGATGAGCCAATCTTCGAA ACAGCTGGAGCTTAGTTTATAG
AA sequence Show only first row Show all	>Lus10008129 pacid=23169753 polypeptide=Lus10008129 locus=Lus10008129.g ID=Lus10008129.BGIv1.0 annot-version=v1.0 MAAAGNRYSTERHSSGSAGSSFAQTCNLLSQFLKSGKANLGDISLAAKLDHHQSFKSGGAPTATLNLLPSIGNDDGNSKKARDLMDSLPRFVAAGSPAME IKGSVLPAPAQMTIFYGGRVIVFDDFPAEKAKEVMALASGKGATIINNNNNNSNSADERNVNSSASAGSGAASSSSSPEASHNNNNNGGQIERLPFRPPH QPIPSDLPIARRASLHRFLEKRKDRVTSRGPYHFPSSPAAAKPVGGAGSSNNKNNPWLDRQMSQSSKQLELSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	0	1
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	1.0	0.9843
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	3.7	0.9189
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	5.7	0.9007
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	6.7	0.8797
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10041660 [exp]	7.5	0.9113
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	7.7	0.8577
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	10.1	0.8871
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	10.5	0.8918
AT3G11760			unknown protein		Lus10021254 [exp]	11.5	0.8864
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	13.7	0.8554

Compare expression of checked genes

Lus10008129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.