Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17370 642 / 0 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 632 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 584 / 0 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G49600 128 / 9e-33 ATRBP47A RNA-binding protein 47A (.1) AT5G19350 125 / 5e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G11650 125 / 7e-32 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 122 / 1e-30 ATRBP47B RNA-binding protein 47B (.1) AT5G54900 120 / 3e-30 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 118 / 2e-29 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G18510 114 / 4e-28 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013167 [exp] 677 / 0 AT1G17370 575 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 550 / 0 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 540 / 0 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10036435 [exp] 399 / 4e-132 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10041109 [exp] 355 / 2e-120 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10021754 [exp] 127 / 2e-32 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10018345 [exp] 123 / 3e-31 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 121 / 1e-30 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10031844 [exp] 119 / 1e-29 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166100 [exp] 689 / 0 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 676 / 0 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G139300 [exp] 597 / 0 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G279600 [exp] 525 / 0 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 513 / 0 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.014G034600 [exp] 128 / 6e-33 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 128 / 8e-33 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G017200 [exp] 127 / 1e-32 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 125 / 7e-32 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G105300 [exp] 125 / 8e-32 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10008130 pacid=23169785 polypeptide=Lus10008130 locus=Lus10008130.g ID=Lus10008130.BGIv1.0 annot-version=v1.0 ATGCAGCACCAGCGGCTGAAACAGCAGCAGCAGCAGGCTTTGATGCAGCAAGCTCTCCTCCAGCAGCAACAGTCTCTGTACCACCCCGGCCTCCTCGCTC CACCTCAGATTGAGCCAATTCCCAGCGGAAATCTGCCACCTGGTTTTGATCCTAGCACTTGCCGCAGTGTGTATGTGGGAAACATCCATACACAGGTTAC TGAACCACTTCTCCAAGAAGTTTTTGCGAGTACAGGGCCTGTCGAGGGTTGCAAGCTTATAAGGAAGGAAAAGTCATCCTATGGGTTTATTCACTACTTT GATCGTAGGTCAGCTGCTCTTGCCATATTATCTCTTAATGGAAGACACTTATTTGGTCAACCAATCAAAGTTAATTGGGCCTACGCTAGTGGTCAGAGGG AGGATACATCAAGTCACTTTAACATATTTGTTGGAGATTTAAGTCCGGAAGTCACCGATGCAACGCTGTTTGCATGTTTTTCTGTTTATCCCAGTTGTTC TGATGCTAGAGTGATGTGGGATCAGAAGACTGGACGCTCAAGAGGGTTTGGTTTCGTTTCTTTCCGTAACCAGCAGGATGCCCAAAGTGCCATAAATGAC TTGACAGGGAAGTGGCTTGGTAGCAGGCAGATAAGGTGCAACTGGGCAGCCAAGGGAGCTGGATCCAATGATGACAAACAAAGCTCAGATGGCAAGAGTG TCGTCGAACTAACTAATGGCTCGTCAGAAGATGGTAAAGAGAGTATTAACAACGATGCTCCTGAGAATAATCCTCAGTACACAACCGTCTATGTTAGCCA ACTCGATCTCCATCGCCACTTCCACTCTCTTAACGCTGGAGTCATCGAGGAGGTCCGTGTTCAGCGCGACAAGGGATTCGGTTTCGTCAGGTACAGCACC CATGCTGAGGCTGCTTTCGCTATTCAGATGGGGAACACTCAGTCGCTTCTTTGCGGGAAACCAATCAAGTGCTCATGGGGAAGCAAGCCGACTCCTCCAG GAACGAGTTCAAACCCACTCCCACCTCCCTCAGCAGCAATGCCGATGCACGGAGGAGTCTCAGCAGCCGAGCTTTTGGCATACGAGCGCCAGCTGGCAAT GAGCAAGATGGGAGGTGTCCACGCTTTGATGCATCCGCAGGGGCAGCATCCGATGAAACAAATGGGGGCTGCCGGAGCAAGCCAGGCAATCTATGATGGT GGCTACCAGAACGTCACTGCTGCCCAGCAATTCATGTACTACCAGTAA
AA sequence Show only first row Show all	>Lus10008130 pacid=23169785 polypeptide=Lus10008130 locus=Lus10008130.g ID=Lus10008130.BGIv1.0 annot-version=v1.0 MQHQRLKQQQQQALMQQALLQQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYF DRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND LTGKWLGSRQIRCNWAAKGAGSNDDKQSSDGKSVVELTNGSSEDGKESINNDAPENNPQYTTVYVSQLDLHRHFHSLNAGVIEEVRVQRDKGFGFVRYST HAEAAFAIQMGNTQSLLCGKPIKCSWGSKPTPPGTSSNPLPPPSAAMPMHGGVSAAELLAYERQLAMSKMGGVHALMHPQGQHPMKQMGAAGASQAIYDG GYQNVTAAQQFMYYQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	1.0	0.9601
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	2.8	0.8908
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	5.2	0.8891
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10014912 [exp]	6.5	0.8419
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10039398 [exp]	6.5	0.8202
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10029510 [exp]	7.5	0.8699
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	10.4	0.8802
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10035856 [exp]	10.5	0.7868
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	11.2	0.8795
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	12.0	0.8883

Compare expression of checked genes

Lus10008130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.