Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14110 328 / 7e-114 FLU FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G16760 48 / 5e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013168 [exp] 502 / 0 AT3G14110 325 / 9e-113 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10015677 [exp] 372 / 5e-130 AT3G14110 312 / 8e-108 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10037686 [exp] 358 / 8e-125 AT3G14110 304 / 2e-104 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166000 [exp] 352 / 8e-122 AT3G14110 371 / 4e-129 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.010G007000 [exp] 44 / 0.0001 AT3G16760 267 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008131 pacid=23169741 polypeptide=Lus10008131 locus=Lus10008131.g ID=Lus10008131.BGIv1.0 annot-version=v1.0 ATGGCGGTGGCAATCCGCTGCTGTGCTTTTTCACCGCCGGACCTCTTGGCCTCCCAAAGATCACTTCTTTCGGGGAAGCTACCTTGTGCATTACTCAAAG TAGACAAGTTATCATCTAGGGATGCACCAGACATACAACAGTCTTTTGCTTGGCTTAACTCGAAGCAACTGGCGAATGGACATCAGGACGCTTCACTCCA ACGTTTTGTCTGCTCATCAGGTAGGATGGGGAAATTGTTCTTGCGATCCTCGGCGATTTCGCTGGTGACTAATGCTTTCATGGCTGCTGCTGCACCTTCT GAAGCCATGGCTCAAACATGTGAGGCCGCGGCGGACAACTCTTTTCTCAACATGCCCGTGTTGCTCTTTGTTGCACTGGTCGGGGCTACTGTTGGAGGGT TGCTGGCACGGCAGAGGAAAGGAGAACTGAAGCGTCTGAACGAGCAACTACGCCAAATCAATGCTTCCCTAAGAAGACAAGCGAAGATCGAGTCGTACGC CCCCAACCTAAGTTATGCTCCCGTGGGTAGCAGGGTCCAGGACGAAGTGATAGTAGACTCGAGGAAACAAGAACTCATTTCCCGGTTGAGAAGCGGGAAG AACTACTTAAGGAACCAGGATCCGCAGAAGGCATCGGAGGAGTTCAAGACGGCGCTTAGCCTTGCTCAAGATTTGAAAGATCCTACGGAGGAGAAGAAGG CTGCAAGAGGCTTAGGAGCCTCCTTCCAAAGACAAGGACAGTATCGCGAAGCGATAAAGTACCATTCAATGGTGCTGGAGATATCGAAGCGGGAAGGAGA AGAGTCTGGAAATACTGAAGCTTTTGGAGCCATTGCAGACTGTTACACTGAGCTAGGGGATCTTGAGCAAGCCGGGAAGTTCTATGACGATTACATTGCT AGACTCGAAACCGACTGA
AA sequence Show only first row Show all	>Lus10008131 pacid=23169741 polypeptide=Lus10008131 locus=Lus10008131.g ID=Lus10008131.BGIv1.0 annot-version=v1.0 MAVAIRCCAFSPPDLLASQRSLLSGKLPCALLKVDKLSSRDAPDIQQSFAWLNSKQLANGHQDASLQRFVCSSGRMGKLFLRSSAISLVTNAFMAAAAPS EAMAQTCEAAADNSFLNMPVLLFVALVGATVGGLLARQRKGELKRLNEQLRQINASLRRQAKIESYAPNLSYAPVGSRVQDEVIVDSRKQELISRLRSGK NYLRNQDPQKASEEFKTALSLAQDLKDPTEEKKAARGLGASFQRQGQYREAIKYHSMVLEISKREGEESGNTEAFGAIADCYTELGDLEQAGKFYDDYIA RLETD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10008131 [exp]	0	1
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	5.2	0.9623
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10013041 [exp]	6.5	0.9582
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	8.5	0.9576
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10025592 [exp]	11.7	0.9489
AT4G19100		PAM68	photosynthesis affected mutant...		Lus10012152 [exp]	11.8	0.9435
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	12.0	0.9438
AT1G67700			unknown protein		Lus10006442 [exp]	12.2	0.9502
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	13.0	0.9443
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	13.3	0.9508
AT2G26340			unknown protein		Lus10000477 [exp]	16.1	0.9478

Compare expression of checked genes

Lus10008131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.