Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72390 796 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013169 [exp] 1734 / 0 AT1G72390 746 / 0.0 unknown protein Lus10013170 [exp] 116 / 6e-31 AT1G72390 74 / 3e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165800 [exp] 987 / 0 AT1G72390 778 / 0.0 unknown protein Potri.003G069200 [exp] 980 / 0 AT1G72390 739 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12090 [flax] [poplar] Spt20 Spt20 family
Representative CDS sequence Show only first row Show all	>Lus10008132 pacid=23169776 polypeptide=Lus10008132 locus=Lus10008132.g ID=Lus10008132.BGIv1.0 annot-version=v1.0 ATGGGCGTCTCGTTTAAGGTCTCCAAGAAGGGTTCAAGGTTCCGTCCAAAACCTGTAGCTCAGCAAAAGGATGTTGCTTTCGATGATGAATCGGAAGTTC CCAAGGATGGGTCCTTGATTGGCGCCAGAAATCCTTCGTCGAAGAAAAGGGCCGAGGGCACTTTTGTCGATGGTACTGATGATCTACCGGATGTCTCGAG TATATCTGTCCGTGAGAACGAAGTTTCTTTCACTTTGAACCTCTATCCAGATGGATATTCTATTGGAAAAGCTTCGGAGAATGATATTGTGCACAGGGCT CCCCTTCAAGATGCTTCAAAGTTGCTGCACCCTTATGATAGGGCATCTGAAACTATATTCGTGGCAATTGAGTCTGGCTGGTTACCGGGAGATATCTTGG ATGATATACCATGCAAGTACGTTAATGGAACTCTAATATGTGAGATTCGGGATTATCGGAAGTGTGCTACTGAGCACGGGTCTGCTATCACATCTACTGA TGCAACCCCTATCATAAATAAAGTGCGCCTAAAGATGTCATTGGAGAATGTAGTAAAGGATATTCCATTGATCTCAGATAACTCATGGACCTATGGGGAT TTGATGGAAGTGGAGTCCAGGATAGTGAAGGCTTTGCAGCCAGTACTTTCTCTTGATCCCAAACCAAAGTTGGATAGACTTTCTGCTAGTCCTCTTCCTT CGAAGCTTAATTTAAATCTGGCTAGTCTGCGGAGGAAAAGGTTGCGGCAGATTACGAATGTTACTGTAACATCTACAAGCAGACTCCACGGGAAGAAAGT TTGCATAGATCAAGTCCCGGAAAGCTCTAACAGTAGATTTTCTGACCCAAACATTATGGTGGGCAATATGATGCACCCGCATGTCCAGGGGAATCTAACA GCTCCAAATCTTGGTCCAGGAAACATGCCAGGTGGCAGTAGTCAGGCATTCCCTTTGGTTTCTTCTCAGCCAAGGTATCAACCGGGCGTTGGCTCAGGGC CTCTTGTTAATGTTTCGGCAGCTTCCCCGGGTGGACAAGAGATGATGGTCACTTATAATGACAATGTAAATGCAAGTGCTTCACTGCATGGTAAAAGAGG AAATCAAGATGGACAAACATCACCACTAGCAAATAATAATAAGAGAGCGAGGATGACATCAGGTCCTGACGGTAAACAACAGCCACAAGTTGGACCAATT TCAGATAACCTCCAAGCGGCTGATATGAACTGGAAGAGTTCATTACTTCAGCAGCACATGATGGCAAGAGGAATGCAGCAGTACCCCAATGCAGGGATTC AAAAGTATCCACAGATGTTTGAAGGGGTTTTGAATCAGGGTGCTGGAACACCATTTTCTGCTGGACAATCGGCTTTGAGGTTTGGTCCAAAGGAAGAACT GTTTGAGTCAGACAAGCTTGGTGGATCTGAACTGAATCAGGGCAAGAGTGATATGACAATAGAGAACAATTTAGTAAGTCTGGATCCACAGCAGTTGCGC CTACAGCAAAGACTTCCACAACATATGATGAGACCGAATTTTCCCCAGACGGGATGGAACAATCTCAGCCAAGACACAAAGAAGGAAGAACAACAACACC CAAAGAGGAAACCAGCACAAAGTCCCCGTTTGTCTGCAGGGACATTGGCTCAGTCTCCATTATCGTCAAGATCTGGGGAATACTCTGGTAACTCAGCTGG ACCTCACATGGGAGGAGTTGCAGCAGTAACCTCTCTTGGATCGCAGAAGGACAAGTCCGCTGTTACCTCGCTTCCTGCCATTGCTGGGACTGCTTCTGCC AAGCGGAGGTCAAATTCGGTCCCAAAGAACTCTGCTATGAGTGGAGTTGCCTCTCCTGCAAGTGTTGGTAACATTAGTGGTTCATTAAATGCAAATAGTC CTACAGTTGGAACACAATCTATGGCTGATCATGCCATTCTTGATAGGTTTGCGAAGATTGAGATTGTCGCTTCAAGGCATCAGCTTAACCGTAAAATGAA TAAACTAGATGACTACCCAAGGAAGCAAAATACGTATAATCCTCAGAATATTGCGGTTTGCCTATCCAATGCAGCGAATTATGAGGATTTCAAAGATGAA ATTAAAGAAAGGCAATTATCGAAGTCACTTGTTGGTGGCAACATCAATGTTCTCAAGATAAGAGTTATGAATTTTATGCAAGGTGAACGAGTGTTGCAAG GAAATGTCGTGACTTATGTCCCGAAGGCACGTGCTAGAATGATCATGATGGAGAAGTCGAATGATGGTACTGTGGCTATGCACTATGGAGACTTAGAGGA TGGGGATGTTCTCTCTGCTGAGGAATATCTTCCTACATTGCCTAATACTCATTTTGCGGATTTGTTCGCGCAGCAGTTCTGTACATTGATGAGTCGAGAT GGCTATCTAGTGGAAAATCACATCGAACAAAAACCAACAAGGATGAATAATACTTCATCAAGCAGTCAACCTGGTGTATTCCCCAACAATGTAACAATGG AGATGCAGCAGCAATACAATGAATCCATGGCGGGTCAGACCTCAAATGATGTGAAGCCCACTCTTAGTGGCAACCCTTCGGTAAATTCGTCCCAGAACGC ACCGTTAAACGCAAGGATGCTGCCTCCCGGGAACTCTCAGGCCTTACAGATGCCGGTGCCTCCAAGACCGCAACAACTGGACCCACAACAGTTACCAATT CCGCAGCAATCACAGCAACAAAACCAACATGCTTTACTTCAACAACAGCATCATCAGCATCAACAGCTTCAGAGGACACAAATGGTGCTTCCACCAAACC CACTCTCCCATTTGAACACCATGGGGCAAAATCCGAACATGCAATCGGGTGGCCATTCGGTTAATAACAAACATTCTCCACTCCAACTTTCCCAGCAACA ACTGCAGCAGAGGAAATTGATGATGGGGCTTGCGGGGCAACCGGGCATGGGCAATATCGGAAATAACATGGCGGCGTTCGGAGGCTTGGCGAATGCCATG GGGATCGGAGGAGCTGCAAGGGGAATTGTCGCCGGTTCAGGAATTTCTGGACCAATGGCACCTAATTCGGGTAATGTTGGTGGTCAGAACCCAAACCAGA TGCTAATGAGCCAGGGGATTAACATCGGTAACGCCTTAAGCCAGCAGTTTCGATCCGGGAAGATGAATCAGCAACAGGCTGCCTTTTTGACATCGCTCAG GATGGCGAGTGCTCGAACAACCATGCTCGGTGGCCCTCAGCCTGGAATGTCTGGTGGTCGACAGATTAATCACCCGAATGCTGCCGGTCTGTCCATGTTG GGACAATCCCTAAACAGACCCAACATGAGCCAGATGCAACGAAACGCAATGGGCCCGCCGAAGCTTGCAGGGATGAACATGTATATGAATCAGAATCAGC AATTGCAGTTACAACAGCAGCAGTTGCAGCAATTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCTGAAGCTACCTCGTCGCTTCAAGCTGTGGTTTC GCCATCCCAAGTTGGCTCACCATCAACCATGGGAATTCCACAGCAGCAGCCTAGCCCGCAGCAAATGGGGCAGAGGACTCCGATGAGCCCGCAAATCAGT TCAGGGGCGATTAACACGGAGGGATGTCCACCGGCTAGTCCGCAGTTGAGTTCACAGACAGTTGGGTCCATTGGAAGTATGGCGGCGAACTCTCCAATGG ATCTTCAAGGTGTGAATAAGAGCAACTCTGTTAACAATGCATAG
AA sequence Show only first row Show all	>Lus10008132 pacid=23169776 polypeptide=Lus10008132 locus=Lus10008132.g ID=Lus10008132.BGIv1.0 annot-version=v1.0 MGVSFKVSKKGSRFRPKPVAQQKDVAFDDESEVPKDGSLIGARNPSSKKRAEGTFVDGTDDLPDVSSISVRENEVSFTLNLYPDGYSIGKASENDIVHRA PLQDASKLLHPYDRASETIFVAIESGWLPGDILDDIPCKYVNGTLICEIRDYRKCATEHGSAITSTDATPIINKVRLKMSLENVVKDIPLISDNSWTYGD LMEVESRIVKALQPVLSLDPKPKLDRLSASPLPSKLNLNLASLRRKRLRQITNVTVTSTSRLHGKKVCIDQVPESSNSRFSDPNIMVGNMMHPHVQGNLT APNLGPGNMPGGSSQAFPLVSSQPRYQPGVGSGPLVNVSAASPGGQEMMVTYNDNVNASASLHGKRGNQDGQTSPLANNNKRARMTSGPDGKQQPQVGPI SDNLQAADMNWKSSLLQQHMMARGMQQYPNAGIQKYPQMFEGVLNQGAGTPFSAGQSALRFGPKEELFESDKLGGSELNQGKSDMTIENNLVSLDPQQLR LQQRLPQHMMRPNFPQTGWNNLSQDTKKEEQQHPKRKPAQSPRLSAGTLAQSPLSSRSGEYSGNSAGPHMGGVAAVTSLGSQKDKSAVTSLPAIAGTASA KRRSNSVPKNSAMSGVASPASVGNISGSLNANSPTVGTQSMADHAILDRFAKIEIVASRHQLNRKMNKLDDYPRKQNTYNPQNIAVCLSNAANYEDFKDE IKERQLSKSLVGGNINVLKIRVMNFMQGERVLQGNVVTYVPKARARMIMMEKSNDGTVAMHYGDLEDGDVLSAEEYLPTLPNTHFADLFAQQFCTLMSRD GYLVENHIEQKPTRMNNTSSSSQPGVFPNNVTMEMQQQYNESMAGQTSNDVKPTLSGNPSVNSSQNAPLNARMLPPGNSQALQMPVPPRPQQLDPQQLPI PQQSQQQNQHALLQQQHHQHQQLQRTQMVLPPNPLSHLNTMGQNPNMQSGGHSVNNKHSPLQLSQQQLQQRKLMMGLAGQPGMGNIGNNMAAFGGLANAM GIGGAARGIVAGSGISGPMAPNSGNVGGQNPNQMLMSQGINIGNALSQQFRSGKMNQQQAAFLTSLRMASARTTMLGGPQPGMSGGRQINHPNAAGLSML GQSLNRPNMSQMQRNAMGPPKLAGMNMYMNQNQQLQLQQQQLQQFQQQQQQQQQQPEATSSLQAVVSPSQVGSPSTMGIPQQQPSPQQMGQRTPMSPQIS SGAINTEGCPPASPQLSSQTVGSIGSMAANSPMDLQGVNKSNSVNNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72390			unknown protein		Lus10008132 [exp]	0	1
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	2.4	0.7878
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	5.1	0.7987
AT3G06670			binding (.1.2)		Lus10037742 [exp]	6.3	0.8002
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	7.1	0.7429
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10013479 [exp]	15.7	0.7776
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	16.4	0.7206
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	16.7	0.7453
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	17.1	0.7715
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	17.7	0.7841
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	19.0	0.6946

Compare expression of checked genes

Lus10008132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.