Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14130 490 / 1e-174 Aldolase-type TIM barrel family protein (.1) AT3G14150 478 / 8e-170 Aldolase-type TIM barrel family protein (.1.2) AT3G14420 422 / 9e-148 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 415 / 5e-145 Aldolase-type TIM barrel family protein (.1.2.3) AT4G18360 414 / 7e-145 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013171 [exp] 679 / 0 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038507 [exp] 421 / 2e-147 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 412 / 1e-143 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10005590 [exp] 408 / 3e-142 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 407 / 1e-141 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038144 [exp] 281 / 2e-93 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 279 / 9e-93 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 254 / 1e-84 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10013174 [exp] 197 / 5e-63 AT3G14150 142 / 3e-42 Aldolase-type TIM barrel family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G069600 [exp] 525 / 0 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 519 / 0 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 506 / 0 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.001G394400 [exp] 413 / 2e-144 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.004G065200 [exp] 412 / 6e-144 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 409 / 1e-142 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10008133 pacid=23169740 polypeptide=Lus10008133 locus=Lus10008133.g ID=Lus10008133.BGIv1.0 annot-version=v1.0 ATGGCAGGCGAACCGGTCAATGTGAGCGAGTTCGAAACGCTGGCGAAACGAGCCCTTCCGAAAATGTACTTTGACTTCTATGCTGGGGGAGCTGAGGATG AATCCACACTCAAAGACAACGAGGAAGCGTATCGGAGAATCACGATTCGTCCAAGAGTTTTAGTAGATGTGAGCAGGATAGATACGAGTACCACCATATT GGGTTATCCCATCTCAACTCCTATTATGGTGGCCCCAAGTGCTCTTCACAAGCTAGCAAATCCAGAAGGCGAACTTGCCACTGCTAGAGCTGCTGCTGCC TCCAACACTATCATGATTCTGTCCTTCTCATCCAGTTACAATGTCGAGGAGGTTGCTGCTAGTTGCGAAGCAGTTCGTTTCTTCCAATTATATGTCTACA GAGGACGACATATCGCTGAGAACTTAGTGCAGCGAGCTGAACGAAGCGGATATAAGGCTATCGTGTTGACAGTAGACTGTCCGAGACTTGGTCGAAGGGA GGCAGACATTAGGAATAGGATGATTGTCCCGAAGCTGAAGAATGTCGAAGACTTTGTATCGAATGATGTGGATGCTGGTAGTGGTTCAAACTTGGAAGCT TATGCAAACTCTACATTCGATCCTACACTGAATTGGAAGGATGTCGCGGGGGTGAAGTCCATCACTAACTTGCCTATCCTGCTTAAGGGAATACTCACTC ATGAAGATGCAATAAAAGCCGTGGAGGTAGGTGCTGCGGGGATCGTTGTCTCGAATCATGGCGCCCGGCAGTTGGATTACAGTCCTTCCACAATCAGTGT GGTGGAAGAGGTGGCTCGCGCGGTGAAAGGGAAGATTCCGGTAATAGTGGACGGAGGAGTTCGGAGAGGGACCGATGTTTTCAAGGCATTGGCATTGGGT GCACAAGCAGTCCTCGTTGGAAGGCCGGTCATATACGGGCTGGCAGCCAAGGGTGAAAAGGGGGTGAAGCAAGTAATTCAGATGCTGAAGGATGAGTTTG AGCTCACAATGGCACTAGCTGGATGTACTAGCATCAAGGATATTAGTAGAAGCCACGTAAGGACCGAGCGAGACCGACTCCTATCCCTGCTCTAA
AA sequence Show only first row Show all	>Lus10008133 pacid=23169740 polypeptide=Lus10008133 locus=Lus10008133.g ID=Lus10008133.BGIv1.0 annot-version=v1.0 MAGEPVNVSEFETLAKRALPKMYFDFYAGGAEDESTLKDNEEAYRRITIRPRVLVDVSRIDTSTTILGYPISTPIMVAPSALHKLANPEGELATARAAAA SNTIMILSFSSSYNVEEVAASCEAVRFFQLYVYRGRHIAENLVQRAERSGYKAIVLTVDCPRLGRREADIRNRMIVPKLKNVEDFVSNDVDAGSGSNLEA YANSTFDPTLNWKDVAGVKSITNLPILLKGILTHEDAIKAVEVGAAGIVVSNHGARQLDYSPSTISVVEEVARAVKGKIPVIVDGGVRRGTDVFKALALG AQAVLVGRPVIYGLAAKGEKGVKQVIQMLKDEFELTMALAGCTSIKDISRSHVRTERDRLLSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	0	1
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	1.0	0.8342
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013171 [exp]	3.3	0.7180
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10017125 [exp]	4.6	0.7288
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	6.3	0.7375
AT4G19880			Glutathione S-transferase fami...		Lus10038348 [exp]	8.1	0.7354
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	9.8	0.7817
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	11.8	0.7215
AT2G34930			disease resistance family prot...		Lus10024737 [exp]	12.0	0.7217
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	18.0	0.6854
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	20.1	0.6351

Compare expression of checked genes

Lus10008133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.