Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66840 107 / 8e-26 SAP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013172 [exp] 313 / 2e-107 ND 46 / 1e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G069700 [exp] 165 / 6e-47 AT5G66840 207 / 2e-60 SAP domain-containing protein (.1) Potri.005G136000 [exp] 109 / 5e-27 AT5G66840 231 / 2e-70 SAP domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008134 pacid=23169735 polypeptide=Lus10008134 locus=Lus10008134.g ID=Lus10008134.BGIv1.0 annot-version=v1.0 ATGCTCATTCAACGCATTAAAGAGCATCAAGAGTACAATATTGCATCAAGGAGTGCCAGTGGTCCTCCCTGTGGAAAGAGGATTGTGGCAGGGAGAATTG TGAAAGAAAGCTATGGTGCAGCCAAGCAACAACACACTTTTACAATAGAGGTCCTGTGGAGCAAAGGGGAAAAGCCACTCCCTCCACTTCATCCCCTCCT GATAAAGGGTCGGAATTTGTATCGATTGAAGACTTTGAGACAGCGATGGCAAGATGAAAACCAAAGGTCAAGAGTTCTTTTGGAGAAGCACTCAAGGGGT TCTCTTGCCAGATCTGATAGAGAAACCCGGATGTTAGAAAAGGAAAAAAGGAAACTACTGTGTAAAGGAAGGGTCTCCAGGAAGGATCCGAAGAGGAAGC ACGTCGATACTATTCACTCAACTGAACCAGCAAAGACGGATTCTTTGCTCGTTCAACAGCCAAGTATAGCTGTGAATTCCCAAACCATGGCAACTCAAGG AAAACAATACGGGAAAGGAACAAATGAAGATCCATCCACCGTTGCAATTAACATGGAAGTCAGAATTCAGAACCCAAAGATCCCACACCCAAGTTCAGGA CAGCTTAATGGAAACGATACCATAATGGGACAAGGTGGTATACATCAGAAGCTACCATATTACCCTCAACAGGATCCTATTGAGAATCGAAACTCGACTT TTTCGTTGGAGTCGAGGAAGATGATCCTTCAAGGTGGCAGACCAAACAACCATGCACAGAAGCACGAAAGTTACTACCGGGGAGATCAAGTTCCTTGGGA GCTACAACCTATGAGGTATGGTGGCAATCAACAAGTACAGAACTTCAGGAGGCAGCCTTTGACTCGAATGAATAATCACGGTCCAGCTAGACAGCCGCAG TCACATGGACGACAAATGTGCAAATACTATGCTCAGGGAAGATGCTATTTTGGCAACGGTTGCAAGTTCTCGCACCAGCGCAACGAGGTATAG
AA sequence Show only first row Show all	>Lus10008134 pacid=23169735 polypeptide=Lus10008134 locus=Lus10008134.g ID=Lus10008134.BGIv1.0 annot-version=v1.0 MLIQRIKEHQEYNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQRWQDENQRSRVLLEKHSRG SLARSDRETRMLEKEKRKLLCKGRVSRKDPKRKHVDTIHSTEPAKTDSLLVQQPSIAVNSQTMATQGKQYGKGTNEDPSTVAINMEVRIQNPKIPHPSSG QLNGNDTIMGQGGIHQKLPYYPQQDPIENRNSTFSLESRKMILQGGRPNNHAQKHESYYRGDQVPWELQPMRYGGNQQVQNFRRQPLTRMNNHGPARQPQ SHGRQMCKYYAQGRCYFGNGCKFSHQRNEV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66840			SAP domain-containing protein ...		Lus10008134 [exp]	0	1
AT5G07380			unknown protein		Lus10032518 [exp]	4.2	0.8944
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10014265 [exp]	6.2	0.8487
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	8.3	0.8992
AT2G40435			unknown protein		Lus10025257 [exp]	18.0	0.8195
					Lus10032947 [exp]	20.3	0.8733
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	20.6	0.8783
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	20.8	0.8391
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	28.4	0.8741
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	30.4	0.8599
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	31.4	0.8611

Compare expression of checked genes

Lus10008134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.