Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11890 362 / 3e-128 ATSEC22, SEC22 SECRETION 22, Synaptobrevin family protein (.1) AT5G52270 115 / 3e-31 SNARE-like superfamily protein (.1) AT5G58060 54 / 7e-09 ATYKT61, ATGP1, YKT61 SNARE-like superfamily protein (.1.2) AT2G25340 53 / 4e-08 ATVAMP712 vesicle-associated membrane protein 712 (.1) AT4G32150 49 / 9e-07 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 45 / 1e-05 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013175 [exp] 394 / 1e-140 AT1G11890 411 / 2e-148 SECRETION 22, Synaptobrevin family protein (.1) Lus10036987 [exp] 391 / 1e-139 AT1G11890 415 / 6e-150 SECRETION 22, Synaptobrevin family protein (.1) Lus10015808 [exp] 133 / 1e-36 AT5G08530 440 / 6e-153 51 kDa subunit of complex I (.1) Lus10036297 [exp] 50 / 3e-07 AT5G58060 364 / 3e-130 SNARE-like superfamily protein (.1.2) Lus10019047 [exp] 50 / 4e-07 AT5G58060 362 / 3e-129 SNARE-like superfamily protein (.1.2) Lus10043394 [exp] 50 / 4e-07 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10034189 [exp] 50 / 4e-07 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10041035 [exp] 45 / 1e-05 AT5G11150 343 / 9e-122 vesicle-associated membrane protein 713 (.1) Lus10006192 [exp] 45 / 2e-05 AT5G11150 345 / 9e-121 vesicle-associated membrane protein 713 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165600 [exp] 369 / 3e-131 AT1G11890 427 / 9e-155 SECRETION 22, Synaptobrevin family protein (.1) Potri.003G069900 [exp] 368 / 1e-130 AT1G11890 429 / 2e-155 SECRETION 22, Synaptobrevin family protein (.1) Potri.012G140600 [exp] 134 / 8e-39 AT5G52270 211 / 2e-69 SNARE-like superfamily protein (.1) Potri.018G110700 [exp] 57 / 8e-10 AT5G58060 375 / 8e-135 SNARE-like superfamily protein (.1.2) Potri.018G125900 [exp] 57 / 1e-09 AT4G32150 276 / 1e-94 vesicle-associated membrane protein 711 (.1) Potri.006G187700 [exp] 56 / 2e-09 AT5G58060 381 / 5e-137 SNARE-like superfamily protein (.1.2) Potri.006G256200 [exp] 54 / 1e-08 AT4G32150 352 / 5e-125 vesicle-associated membrane protein 711 (.1) Potri.018G025800 [exp] 52 / 4e-08 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.009G018900 [exp] 52 / 5e-08 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.001G219200 [exp] 51 / 2e-07 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10008135 pacid=23169758 polypeptide=Lus10008135 locus=Lus10008135.g ID=Lus10008135.BGIv1.0 annot-version=v1.0 ATGGTGAAGCTTAATGATGTTATCTCTTTTCTGATGATGCATTTGCAGTTGCATTTCATATCTGAGGAATTCGCCAACGGAAAGATGGTGAAGCTTACAA TGATAGCTCGTGTTACTGACGGTCTTCCACTGGCGGAAGGTCTGGATGACGGTCGTGATGTCAAAGATATTGAATTGTACAAGCAGCAAGTCAAGGCCTT GTTCAAGAATCTCGCCATTCGCCAGAATGAGCCTTCGAGGATGTCGGTCGAGACTGGCCCTTATGTCTTCCACTATATTATCGAAGGACGAGTATGCTAC CTTACGATGTGTGACCGTGCATATCCTAAGAAACTCGCCTTTCAATATCTCGAAGACTTGAAAAACGAATTCGAGCGTGTCAATGGGGCTCACATCGAGA CTGCTGCCAGACCTTATGCCTTTATCAAGTTTGATACTTTTATACAGAGAACAAAGAAATTGTACCAGGACACACATACCCAGCGGAACATTTCTAAGTT GAACGATGAACTCTATGAAGTCCATCAGATTATGACCCGTAATGTGCAAGAGGTTCTAGGAGTTGGTGAAAAGCTTGACCAGGTCAGTGAGATGTCCAGT CGGTTAACATCTGAATCTCGTGTATATGCGGACAAGGCTAGAGATTTGAATCGACAGACTAGGTTGTTGATCACTCGTGATTTCGGTGCAGGCATTGATC CGGAAGTGGGCTCCGGTGGCCATTGTGTTCGGAGTCGTGTTCCTCCTCTTCTGGGTTAA
AA sequence Show only first row Show all	>Lus10008135 pacid=23169758 polypeptide=Lus10008135 locus=Lus10008135.g ID=Lus10008135.BGIv1.0 annot-version=v1.0 MVKLNDVISFLMMHLQLHFISEEFANGKMVKLTMIARVTDGLPLAEGLDDGRDVKDIELYKQQVKALFKNLAIRQNEPSRMSVETGPYVFHYIIEGRVCY LTMCDRAYPKKLAFQYLEDLKNEFERVNGAHIETAARPYAFIKFDTFIQRTKKLYQDTHTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS RLTSESRVYADKARDLNRQTRLLITRDFGAGIDPEVGSGGHCVRSRVPPLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10008135 [exp]	0	1
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10009495 [exp]	12.2	0.7280
AT3G60450			Phosphoglycerate mutase family...		Lus10024765 [exp]	13.6	0.6925
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	24.7	0.7079
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019502 [exp]	25.7	0.6666
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	29.5	0.7092
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	31.0	0.6694
AT1G70780			unknown protein		Lus10031920 [exp]	55.3	0.6732
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	63.4	0.6670
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10039392 [exp]	64.5	0.6729
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	65.2	0.6459

Compare expression of checked genes

Lus10008135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.