Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39350 639 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 449 / 1e-147 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 421 / 1e-137 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 402 / 6e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 400 / 1e-128 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 394 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 381 / 2e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 379 / 7e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 371 / 1e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 371 / 2e-119 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013176 [exp] 1206 / 0 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 437 / 6e-143 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 423 / 4e-138 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 404 / 9e-131 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 388 / 5e-124 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 387 / 6e-123 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 377 / 7e-121 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 376 / 4e-120 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 378 / 2e-119 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124400 [exp] 774 / 0 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 437 / 7e-144 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 433 / 3e-141 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 404 / 7e-131 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 395 / 2e-127 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 388 / 9e-125 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 384 / 1e-122 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 382 / 1e-121 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G205900 [exp] 376 / 6e-121 AT2G17210 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 380 / 2e-120 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008136 pacid=23169747 polypeptide=Lus10008136 locus=Lus10008136.g ID=Lus10008136.BGIv1.0 annot-version=v1.0 ATGAACAGCCCAGCTCCTCTTGCCAAGGCCAGCTCCAAGCTTGTACAGGCTGTACAGCTTCGTCTCCGCTCTTTAGCTAATGGACGGAAACTGCAGAACA CTGGTTCTGACGATGGCGCGGATGAAATCCATGGGGGGAGTGTGCTCAGGTATAATAAACTTATGAATATGCACGCAAAGAATAGTTCTTTCAGTGAAGT ACTCCAGGTTTTTGTTGAACTGCATCACTCAGGCAGTTGTTTGCCAGATGCCTATTCTTACCCATCTGTTGTTAAGGCTTGTAGTGAGCTATCCTTACTG CGGGTTGGTAGAGTAGTTCATGGCCAGACCTTTGTTTCCTCGTTTGGGTATAATTCGTTTGTTCAGAACTCGTTAATGTCTATGTATATGAGATTTGGAG GGAAGGAGGTTGCTAGGAAGTTGTTTGATGTACTGGAAGAGAAAACTACGGTTTCCTGGAACATTTTAATCAACGGGTATTTCAAGAACGGGTGTCCCGA CACTGCCCTGGCGATTTTCGATGAGATGATGCGTCGCAAGGTTGAATTGGAAAGTGCCACTGTTGTTTCTGTATTGCCAGCTTGTGGGTTGTTGAAGGAA TTGGAGATTGGGGGGAAAGTTCATATTTTGGTAAAGGAGAAGGGTTTGGACAAGAAAATAGAAGTATGTAATTCGTTGGTGGATATGTATTCGAAATGCG GCAGTATGAAAGAGGCTAAGATGGTGTTTGATGAGATGACTGAGAGAGATGTAATAACTTGGACCTCCATGATTAATGGATATATCTTGAATGGTGATGC AAAGGGTGCATTGGACTTTTGCAGGATCATGCAAAATGTGGGAATCAGGCCGAATTTCATAACAGTGGCCTTACTTCTTTCTGCGTGTGCAAGTTTGAAG GGTTTGATGTATGGTCGTTGCATCCATGGATTGTCTATAAGGCTATTTCTTGACTCAAAAGTTGAAGTAGAAACTTCACTGATTGACATGTATGCAAAAT GCCACTGTCTCAATATTAGCTTTGAAGTTTTAGGAAGAAGTTCAAGAAAACGAATCGTTCCATGTAATGCAGTACTCTCTGGGTGTGTTCATAATAATCT CGCATTTGAGGCGGTACGGTTTTTCAAGAACATGTTATCAGAAGGAGTAAGACCAGATGGTTCAACGTTGAACTGTCTATTACCTGCTTACTCCGATCTG GCTGATTTACCCCCTGCGGAAAACGTTCACTGTTTCGTAATGAGGTCAGGGTTTCTTTCTCAAGTTGAAGTTGCCACTTCTCTTATAGATATATACTCCA AGTGTGGAGTACTGGAATCAGCTCACCGGATCTTTGACGATGTGCCGAAAAAGGACATCTTTGTTTGGAGCGTGATAATAGCAGGTTACGGTACGCATGG ACATGGACAAACTGCTGTTTCGCTTTTTAGGCGAATGGTCGATTCCGGCATCGCACCGAATGAAGTCACAGTTACTTCGGTATTGCACGCTTGTAGTCAT GCTGGGTTGGTGGATGAGGGTCTCTATTTGTTCAACTTGATGAGACAAGATTTTCGGGCCGGGCCTAATGAGAATCACTACACTTGTGTTGTTGATATGC TTGGTCGTGCGGGTCGATTAGAGGAAGCCTATGATATTATTAGAACGATGCCGGGTGTACCTAGTCATGCTGTTTGGGGTGCGCTACTTGGTGCTTGTGT TATTCATCAAAAGGTTGAGTTAGGGGAATTGGCAGCGGTTTCACTCTTTCAACTTGAGCCAGAGAATACTGGAAATTACATACTGTTGGGGAAACTTTAT GCTGCAGCTGGCCGATGGGAGGATGCGGAAATGTTAAGAGAGTTGATGAATGATACGGGACTGAGAAAAGAATCTGCTTATAGTCTTATTGGCATCTCCA GTATGTGA
AA sequence Show only first row Show all	>Lus10008136 pacid=23169747 polypeptide=Lus10008136 locus=Lus10008136.g ID=Lus10008136.BGIv1.0 annot-version=v1.0 MNSPAPLAKASSKLVQAVQLRLRSLANGRKLQNTGSDDGADEIHGGSVLRYNKLMNMHAKNSSFSEVLQVFVELHHSGSCLPDAYSYPSVVKACSELSLL RVGRVVHGQTFVSSFGYNSFVQNSLMSMYMRFGGKEVARKLFDVLEEKTTVSWNILINGYFKNGCPDTALAIFDEMMRRKVELESATVVSVLPACGLLKE LEIGGKVHILVKEKGLDKKIEVCNSLVDMYSKCGSMKEAKMVFDEMTERDVITWTSMINGYILNGDAKGALDFCRIMQNVGIRPNFITVALLLSACASLK GLMYGRCIHGLSIRLFLDSKVEVETSLIDMYAKCHCLNISFEVLGRSSRKRIVPCNAVLSGCVHNNLAFEAVRFFKNMLSEGVRPDGSTLNCLLPAYSDL ADLPPAENVHCFVMRSGFLSQVEVATSLIDIYSKCGVLESAHRIFDDVPKKDIFVWSVIIAGYGTHGHGQTAVSLFRRMVDSGIAPNEVTVTSVLHACSH AGLVDEGLYLFNLMRQDFRAGPNENHYTCVVDMLGRAGRLEEAYDIIRTMPGVPSHAVWGALLGACVIHQKVELGELAAVSLFQLEPENTGNYILLGKLY AAAGRWEDAEMLRELMNDTGLRKESAYSLIGISSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	0	1
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	1.4	0.9024
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	2.4	0.8657
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	5.5	0.8568
AT2G39580			unknown protein		Lus10005958 [exp]	7.5	0.8609
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	10.8	0.8580
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	11.2	0.8740
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	11.9	0.8780
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	12.0	0.8696
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	15.9	0.8479
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	17.0	0.8199

Compare expression of checked genes

Lus10008136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.