Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14170 345 / 7e-115 Plant protein of unknown function (DUF936) (.1) AT1G08760 174 / 1e-47 Plant protein of unknown function (DUF936) (.1) AT4G13370 154 / 6e-41 Plant protein of unknown function (DUF936) (.1) AT1G23790 144 / 4e-38 Plant protein of unknown function (DUF936) (.1) AT1G70340 140 / 1e-36 Plant protein of unknown function (DUF936) (.1) AT3G19610 129 / 2e-32 Plant protein of unknown function (DUF936) (.1) AT2G31920 102 / 2e-23 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013177 [exp] 730 / 0 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 173 / 4e-47 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 170 / 4e-46 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10043255 [exp] 158 / 3e-42 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 154 / 1e-40 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 142 / 1e-39 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10012367 [exp] 145 / 1e-37 AT3G19610 174 / 2e-46 Plant protein of unknown function (DUF936) (.1) Lus10002129 [exp] 145 / 1e-37 AT3G19610 260 / 9e-77 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 143 / 3e-37 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G070200 [exp] 498 / 2e-174 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 174 / 1e-47 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 166 / 7e-45 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 160 / 8e-43 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 148 / 5e-39 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 144 / 1e-37 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 142 / 1e-36 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10008138 pacid=23169788 polypeptide=Lus10008138 locus=Lus10008138.g ID=Lus10008138.BGIv1.0 annot-version=v1.0 ATGGCATCTCTGATACCAGGAGTGCTGATAAAGCTTCTCCAGAGCATAAACTCGAACGTCAAAGTTCGAGGCGAGTATAGGTCCGTGCTGCTACAAGTTA TCAGCATCGTACCTGTATTGAGTGGATCGGAGTTGTGGCCGAACCATGGATTCTTCATTAAAGTATCTGACTCCTCTCATTCAACATATGCATCACTTTC GAAGGAAGATAATGAGCTGATCTTGAATAACAAGTTACAACTCGGACAGTTCTTCTATGTTGATAAAGCAGAAGCAGGCACTCCGGTTCCGATCCTGGTT GGTGTTAGACCGCTCCCTGGACGGAATCCTTTTGTCGGAAACCCCAAAGATTTGATGCACATGTCGGTTCCGTCCATGGGCTCTGTACCTGTCGAGAATG ACGCAGGATTACTTGGTCCGAAATCAAAGAGAGGGGAAAGCACGAGAAATAACATTATTATCAAAGAAGAGAAAGCTGCTGTTGCTTCCAGGTATATGCA GGGTGTTTCGGTAATGAACCCTAAATCTGGTGGTGCCGATTCCAACGGATGTGGGAAGAGCACTGAGAGTGAGAATGGTGTTAAGAAAGTCGGAACAGCA AAAGGCAAGCATCAAGAAAATAAAGGTCAGGCAAGGCCAGCCACTCCATCCTGGAATAGACCGGAAACATTGCCATCAACTCCTGAGGTTCTTGTATCCA CCACCGCCTCCAAAGAGATTCCAGTATCTATAGATGGAAAATCTGCAAGAGTTTCATCCAATAAGCAGCAAACTAAGAGCTTGAGTTCGACTTCAAGTAT CAAACATGAGAATGTGTTATCTGATGCTGTATCCTGGGCCTCACTACCAACTAACTTGTTGAAGCCAGGAAAAGTAATGCTGAGGAGGAAATATTTAGCT TCTATGGTTGCCACAGAAGCACAGAAGGAGGCATCAAATGCTTTGAATCTAGTCAAGTGCCTCAATATGTTTGCAGACCTATGCTCAACTGCTTCACCAG AGAGTCCACATCTTTCCATCCCAAAGTTCTTCACACTTCAACAGTGCATTGACCAGCCAAATGTAGCAACTCCACTGAAGGACAAGTCATCTCAGCTGAG CTTGCCATTCCCTGCTTCTGAAACAGGAAAAGCTAGCAAAAGACTGAATCCTGTTCATGCCAAAACAATGGGGAAATCATTAAAGACTGCAAAGATGGAA TTCAGTGCAGCTGAAAAAATTGAATGGGCCACCAAAGTAGACGCTGCAGGGGATTTTAAGGAACTATTGAATTTATGA
AA sequence Show only first row Show all	>Lus10008138 pacid=23169788 polypeptide=Lus10008138 locus=Lus10008138.g ID=Lus10008138.BGIv1.0 annot-version=v1.0 MASLIPGVLIKLLQSINSNVKVRGEYRSVLLQVISIVPVLSGSELWPNHGFFIKVSDSSHSTYASLSKEDNELILNNKLQLGQFFYVDKAEAGTPVPILV GVRPLPGRNPFVGNPKDLMHMSVPSMGSVPVENDAGLLGPKSKRGESTRNNIIIKEEKAAVASRYMQGVSVMNPKSGGADSNGCGKSTESENGVKKVGTA KGKHQENKGQARPATPSWNRPETLPSTPEVLVSTTASKEIPVSIDGKSARVSSNKQQTKSLSSTSSIKHENVLSDAVSWASLPTNLLKPGKVMLRRKYLA SMVATEAQKEASNALNLVKCLNMFADLCSTASPESPHLSIPKFFTLQQCIDQPNVATPLKDKSSQLSLPFPASETGKASKRLNPVHAKTMGKSLKTAKME FSAAEKIEWATKVDAAGDFKELLNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	0	1
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	1.4	0.9274
AT1G07120			unknown protein		Lus10031293 [exp]	2.0	0.9183
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	6.1	0.9284
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	6.2	0.9244
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10033993 [exp]	7.7	0.9031
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	9.4	0.8523
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	9.6	0.8638
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	9.8	0.9087
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	11.0	0.8414
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022544 [exp]	11.1	0.8545

Compare expression of checked genes

Lus10008138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.