Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28860 939 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 889 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G02520 886 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G27940 872 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G02530 868 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G10680 864 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 864 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT2G47000 860 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G28010 852 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G01830 851 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020905 [exp] 2061 / 0 AT3G28860 988 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10033470 [exp] 2055 / 0 AT3G28860 986 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10013178 [exp] 1990 / 0 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 904 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 903 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10005249 [exp] 897 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 874 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10038049 [exp] 859 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 858 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165000 [exp] 1753 / 0 AT3G28860 857 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.017G081100 [exp] 929 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.006G123900 [exp] 916 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.016G093600 [exp] 915 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.002G187500 [exp] 882 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 868 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.014G113500 [exp] 868 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G019600 [exp] 860 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.010G003000 [exp] 857 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.003G094400 [exp] 850 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10008139 pacid=23169734 polypeptide=Lus10008139 locus=Lus10008139.g ID=Lus10008139.BGIv1.0 annot-version=v1.0 ATGAGCGACCGAGGTGGTAAATACGAGGAGGATGATGATTATTATGAAGAAGGGTATTATGATGAGGAAGGGGAAGAAGAGGAAGAAGCGGCGACGCCAG TTGGATTGTTTGGATTGTTCAAGTACTCGAGCAAATGGGATATTTTCCTTCTGGTTTTAGGCTGTTTAGGAGCTCTCATCAATGGCGGATCTCTTCCTTG GTACTCTTTCCTGTTTGGGAACTTTGTAAACAGGATTGCCAAGGATTCGAAGGATCAGATGATGGACGATGTACAGAAGATATGTGTGCAAATGACAGCA CTTTCAGTAGTGGTGATGCTTGGAGCATACTTAGAAATCACCTGTTGGAGATTGGTGGGAGATCGATCGGCTCACCGGATAAGAACCAAGTATCTGAAAG CAGTTTTGAGGCAAAATATCGGGTTCTTCGATACCGAAATCGGCACTGGGGATGTAATGCATGGAATTGCAAGTGATGTTGCACAGATCCAAGAAGTGAT GGGGGAGAAGATGGCACATTTTGTTCATCAGCTATTTACCTTCTTCTGCGGCTATGTGGTTGGATTCCTGAGATCATGGAAGGTATCTCTTGTGGTATTA TCGGTGACACCATTGATGATGTTCTGTGGCATTGCTTATAAGGCTGTCTACGTCGGTCTGGCTACAAAAGAAGAGGCTTCATACATGAAAGCTGGCAGTA TTGCTCAGCAGGCCATCAGCGCAATCAGAACTGTGTTTTCTTTTGTTGCTGAGGACAAATTGGCAGATAGGTATAATGAACTGCTGATGAACTCAGTTCT AGTCGGAGCAAAGATCGGATTTGCAAAGGGAGCAGGAATGGGAGTCATTTACTTGGTCACATACTCTACCTGGGCTCTGGCCTTCTGGTATGGAGCAATC TTAGTTGCAGAAGGGGAGATCAGTGGAGGTGATGCTATCGCCTGTTTCTTTGGCGTCAACATAGGGGGAAGAGGTCTAGCGCTGTCGCTGTCATATTTTG CGCAGTTTGCACAAGGCACAGTGGCAGCAACACGTATATATGAAATCATTGATAGAGTTCCAGACATCGATCCTTATAGTTCTGAAGGACATACTATTTC GAGTAGCCGTGGAAGGATTGAGTTCAAAGAAGTCACTTTTGCATATCCATCTCGTCCGGATGCTCGCATTATGCGCTCGATGAATCTGGTAATTCCAGCT TCAAAGACGCTTGCATTGGTCGGTGCTAGCGGAGGAGGGAAATCGACTATTTTCGCTCTTGTGGAACGGTTCTATGATCCCGATTCAGGAGTTATTACCC TGGATGGTCATGACTTGAAGACACTGCAGGTTAAGTGTCTGAGAAGCCAAATAGGAATGGTCGGACAGGAACCGATCCTCTTTGCGACGAGCATTATGGA GAATGTTCTGATGGGGAAGGAAGATGCTACCGAGAGAGAGGCGGTTAAAGCGTGCGTTGCTGCCAATGCTCATGATTTCATATCTGCTCTTCCGCAGGGC TATGACACTCAGGTTGGTGACAGGGGAACGCTGCTGTCAGGTGGACAGAAGCAGCGAATCGCACTGGCTCGTGCAATCCTGAAGGACCCTACGATCCTTC TTTTAGATGAACCCACGAGTGCTTTAGATCCTGAGTCTGAGTCTGCAGTTCAGAAAACCATTGATAAGATATCAGTGGGAAGAACGACTGTCGTCATTGC TCATAGATTAGCAACGGTAAAGAATTCCAACACCATTGTCGTTATCGATCAAGGATCTGTCGTTGAAATTGGTAATCACCGCCAGCTAATGGACAGAGCT GGTTTCTACTGTGACCTTGTCAAGCTCGCCTCTGAAGGAGCCTCAAAACCCGATTCTAAGGATGAAAAGTCAGTTACTGATGTCAAAGCCCAGAGCAAGT TTGAAGAATCCAGATCAATGTACTCAAAATCAAACATGTTGGAGGGTCAGGTAGTCGAGGATGAAACGCAACGAACTCACAAGACGGGGAAGTTCCAGCT CTCGGACGTGTGGGATCTTCAAAGACCTGAGTTCATGACTCTGGCTTTAGGCTTGCTTGGGGGTATTCTTGCTGGTGCAATCCTCTCAGTATTCCCTTTC CTTCTAGGCTTGGCTCTTCAAGTCTACTTTGATGAAGACCATTCAAAGCTAAAGAGAGATGTTGGCAATCTCGCCTTATCGATTTTCGGTCTTGGCATTG GCTGCATTCTGACAATGACAAGCCAGCAAGGATTCTGTGGGTTGGCAGGGACGAAACTGACGGTCCGGACAAGAAACCTGTTATTTCAGTCTATTATGAG ACAGGAACCTGGTTGGTTTGATCTCCAAGAGAATTCCACAGCGGCACTTATATCGAAGTTGGCAGTTGATTGTGTCACGTTCAGATCAGCTCTCGGAGAT CGATTCTCGGTATTGTTCATGGGGTTAAGCTCAGCTGCTGTAGGACTTGGCTTGTCATTTTTCCTCCAGTGGAAACTAACCCTTGTTGCTGCCGTACTAA CTCCATTCACTCTTGGTGCAAGCTACTTGAACTTGATCATCAACGTTGGGCCAAAACTCGACAACGAATCGTACACTAGAGCAAGCAACATTGCCTCTGG TGCTGTGTCAAACATCAGAACGGTAACAACTTTCACAGCGCAAGAACGAATAGTTCAGTCCTTCGGTCAAGCTCTTGCAGAACCAAAGAAGAAATCAGAG AGGAAGTCTCACATGCTTGGCCTAACGCTCGGTTTCTCTCAAGGCGCGATGTATTGCGCTTACACTTTGACTCTTTACTGTGGAGCTTACCTCGTGAAGC ATGGAGAATCGAGCTTCGGCGATGTATACAAAATCTTCCTCATACTTGTGTTGAGTTCATTTTCTGTTGGACAGCTAGCAGGACTAGCACCGGACACTTC ATTGGCTGCAAAAGCCATCCCTTCTATATTCAGCATCGTTTATCGCAGGCCGGTGATTGTGAGTGCTCGAAAGGCGAAAAAGGTCGATAAATCCAAGGCA ATGGATATTGAACTCAAGATGGTGACTTTTTCGTACCCTTCAAGACCAGAGGTTACAGTGTTGAAGGACTTCTCCTTAAAGATCAAGGGTGGTAGCATGG TGGCATTAGTTGGAAGCAGTGGTTCGGGGAAATCGACGGTTATATGGTTGGTACAAAGGTTTTACGACCCGAGTCGAGGGAAGGTAAAGCTCGGTGGGGT CGATTTGAGGGAGCTTGATCTCAAGTGGCTGAGAAGGCAAACAGCTTTAGTAAGTCAGGAGCCTGCACTATTTGCAGGCACCATAAGAGACAACATTGCA TTCGGAGATCCGAACGCTTCGTGGTCCGAAATCAAAGAGGCTGCGAAAGACGCTTATATACACAAATTCATCAGCGGCCTCCCTCAAGGCTACGACACTG AGGTTGGCGAAAGCGGAGTCCAGTTATCGGGAGGGCAGAAGCAGAGGCTAGCAATAGCAAGGGCGATGCTGAAGAAATCGAGCATTTTACTACTCGACGA AGCGAGCAGTGCATTGGACTTGGAATCAGAGCAGCACGTCCAGGAAGCACTTCGGAAGGCATCGAAACGAGCCACCACCATTGTTGTCGCACACCGGTTG TCTACAATTAGAGAAGCTCAGATGATTGCTGTGGTTAAAGATGGTTCCGTAGTCGAGCACGGTAGCCATAGCACGCTCATGAAATCGAACCATAATGGCG TTTACGCTGACATGGTTCGTGCCGAGGTAGAAGCCAATGCATTTGCTTGA
AA sequence Show only first row Show all	>Lus10008139 pacid=23169734 polypeptide=Lus10008139 locus=Lus10008139.g ID=Lus10008139.BGIv1.0 annot-version=v1.0 MSDRGGKYEEDDDYYEEGYYDEEGEEEEEAATPVGLFGLFKYSSKWDIFLLVLGCLGALINGGSLPWYSFLFGNFVNRIAKDSKDQMMDDVQKICVQMTA LSVVVMLGAYLEITCWRLVGDRSAHRIRTKYLKAVLRQNIGFFDTEIGTGDVMHGIASDVAQIQEVMGEKMAHFVHQLFTFFCGYVVGFLRSWKVSLVVL SVTPLMMFCGIAYKAVYVGLATKEEASYMKAGSIAQQAISAIRTVFSFVAEDKLADRYNELLMNSVLVGAKIGFAKGAGMGVIYLVTYSTWALAFWYGAI LVAEGEISGGDAIACFFGVNIGGRGLALSLSYFAQFAQGTVAATRIYEIIDRVPDIDPYSSEGHTISSSRGRIEFKEVTFAYPSRPDARIMRSMNLVIPA SKTLALVGASGGGKSTIFALVERFYDPDSGVITLDGHDLKTLQVKCLRSQIGMVGQEPILFATSIMENVLMGKEDATEREAVKACVAANAHDFISALPQG YDTQVGDRGTLLSGGQKQRIALARAILKDPTILLLDEPTSALDPESESAVQKTIDKISVGRTTVVIAHRLATVKNSNTIVVIDQGSVVEIGNHRQLMDRA GFYCDLVKLASEGASKPDSKDEKSVTDVKAQSKFEESRSMYSKSNMLEGQVVEDETQRTHKTGKFQLSDVWDLQRPEFMTLALGLLGGILAGAILSVFPF LLGLALQVYFDEDHSKLKRDVGNLALSIFGLGIGCILTMTSQQGFCGLAGTKLTVRTRNLLFQSIMRQEPGWFDLQENSTAALISKLAVDCVTFRSALGD RFSVLFMGLSSAAVGLGLSFFLQWKLTLVAAVLTPFTLGASYLNLIINVGPKLDNESYTRASNIASGAVSNIRTVTTFTAQERIVQSFGQALAEPKKKSE RKSHMLGLTLGFSQGAMYCAYTLTLYCGAYLVKHGESSFGDVYKIFLILVLSSFSVGQLAGLAPDTSLAAKAIPSIFSIVYRRPVIVSARKAKKVDKSKA MDIELKMVTFSYPSRPEVTVLKDFSLKIKGGSMVALVGSSGSGKSTVIWLVQRFYDPSRGKVKLGGVDLRELDLKWLRRQTALVSQEPALFAGTIRDNIA FGDPNASWSEIKEAAKDAYIHKFISGLPQGYDTEVGESGVQLSGGQKQRLAIARAMLKKSSILLLDEASSALDLESEQHVQEALRKASKRATTIVVAHRL STIREAQMIAVVKDGSVVEHGSHSTLMKSNHNGVYADMVRAEVEANAFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10008139 [exp]	0	1
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	2.0	0.7815
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10038493 [exp]	2.6	0.7360
AT5G40450			unknown protein		Lus10022266 [exp]	9.1	0.7778
AT4G24480			Protein kinase superfamily pro...		Lus10028168 [exp]	13.1	0.7280
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	13.4	0.7161
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	26.5	0.7645
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	28.8	0.7381
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	37.5	0.7212
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10007924 [exp]	38.0	0.6513
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	38.2	0.7310

Compare expression of checked genes

Lus10008139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.