Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14172 437 / 5e-132 unknown protein AT1G72410 270 / 4e-74 COP1-interacting protein-related (.1.2) AT1G17360 263 / 3e-72 unknown protein AT5G43310 142 / 6e-34 COP1-interacting protein-related (.1.2.3.4) AT4G27430 135 / 7e-32 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 110 / 2e-24 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013178 [exp] 2183 / 0 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10032660 [exp] 153 / 4e-37 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10043092 [exp] 150 / 2e-36 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10011217 [exp] 135 / 5e-32 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10021172 [exp] 134 / 3e-31 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10018471 [exp] 133 / 3e-31 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10011809 [exp] 117 / 3e-26 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10000225 [exp] 85 / 4e-17 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G164900 [exp] 782 / 0 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 752 / 0 AT3G14172 544 / 3e-170 unknown protein Potri.011G122900 [exp] 147 / 2e-35 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.001G403700 [exp] 146 / 4e-35 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.008G168300 [exp] 139 / 5e-33 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.011G046900 [exp] 134 / 1e-31 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.010G070200 [exp] 133 / 4e-31 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.004G038300 [exp] 128 / 1e-29 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.019G064000 [exp] 119 / 7e-27 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 109 / 7e-24 AT3G14172 122 / 7e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008140 pacid=23169757 polypeptide=Lus10008140 locus=Lus10008140.g ID=Lus10008140.BGIv1.0 annot-version=v1.0 ATGAAGCCTGATACATCTCTTGACTATGCTGTTTTTCAACTGTCGCCAAAGCACTCACGGTGTGAGTTGTTTGTTTCAAGGAATGGGATTACAGAGAAGC TTGCTTCGGGATTGGTGAAGCCATTTGTTACTCATTTGAAAGTTGCAGAACAGCAGGTTGTACAGGCTGTTAATTTGATCAAGCTTGAAGTTGGGAAACA TAGAAATGCTGAGACTTGGTTCACGAAAGGGACGCTAGAGAGGTTTGTGCGTTTTGTCAGTACACCTGAGGTTCTGGAGATTGTGAACAAATTTGATGCT GAGATGTCACAATTGGAAGAAGCTCGGAAAATATACTCTCAGGGGGATGGAGGCCAGGTCTCTGGTTCAGGTGAGGATGGTACAGGGAGTTTTGGAGGAG CTGATGCAACAAAGAAAGAGCTTCTGAGGGCAATAGATGTTCGACTGAGTGCGGTTAGGCAGGATTTATTTACCGCATTCTCCCGTGCTTCAGCTGCTGG TTTCAACCCTGAAACTGTCTTAGAACTCCAGCTCTTTTCAGATTGCTTCGGTGCCTATCGTCTTAATGAGGCTTGTATCAAGTTTCTATCACTGTGCCAG AGACGAGTAGATTTGACCAATCATATAAAGCCATGTGTCGAGGATCAAGCAGTTCGCCAATCATGGGAATCTGACATGTCAATTGACGATCCCACTGAAG GCACAAGTGGGTCCCAATTCCATGATGGCAGGCCCCACCAACCCTCATTCCAAGGCAACAAGCACCATGGAAGCCAAGAAGAAGGAAACTTGGCAACTAC TGCCCAAAACCAAACCAGACAACAGGAGTCTTCCTCTGTTAAGGAAGAAGATAAGAAGGAAGGAGCTGTTGCTGAGTCATCACCTGGACAGCCAAGCCAA CCTTCTAGGAGGCTCAGTGTTCAGGACAGAATCAATATGTTCGAGACGAAGCAGAAGGAGAATTCAGGTGGGAAGCCAATAGTTGTTGGCAAATCTGCTG AGTTGAGGAGATTGCCTTCTGATGTGTTATCAGCTGAGAAGGCTGTGCTGAGGAGATGGAGTGGGGCTAGTGATATGAGTATAGATTTAGGAAATGAGAA AAAGGACAGCAATAACACAGATAGCCCATCATGCACACCTTCATCATCCTCTGCAGCGCAAGCCAAAGGTACTGTCTTTCCAGTTTCGTCAGATAATAGC AACAACCTGAAGAACATACATGATCCGGCCAATTTGGTGGAGGCTGATTCTAGGGCTGTTTCTGGGATTCAAGATCAGGATGAGGCGCCTAACTTGCAGA CTCATATTGGGGATATATCTAGTAGGGTTCCAAACCGTGAATTTGGAAACAGAGTTGAACAGATTGGGGTAAGGGATCATATGGAAAATCAGTCACGAGT AAGGAGTCATGGTAGATCTCTTTCGGGGCAGTTTGAAAGTGGTTCAGGAGGCAACACGAAGAACATGCTACATAAAGAGTCTGGAAATGATCAGTCTTCT TCTTCTCAGCGACAGTGGGGATCATTCAACAGTGAAGGTGAGCAAGGTAGGAAGAACGTTATTTCAATTTCCGGGAGGGATTCGACAAAGGTGGAGAATG TAGAAGTTGTGAAGATACAAAAACCGGTTTCTAGTGGGGTAGAACAGATGAATAAACCGCAGGACAGGAAAGATGAGAGGGCTATTCCTTATAGAAGCAA CAAACAAGTTACACATAGTAAAAGGATTTCAGATTCTCTGGAGGGTCACCTTACTGCACAACAACCATCATCTGTGGAGCAATTTCAAAGGGTAAGCCAG TCGAAAGGAAATCAGGAGCTGAACAATGAGCTGAGAATGAAAGCAAACGAGCTAGAAATGCTTTTTGCAGAACATAAACTCCGTGCTCCTGGTGATCAAT CAAGCTTAAATAGGAGAAACAAGCCGATAGAAATGCAGGCTGAAGAGGTAGCAAGTTCTCAGAAGAAACAAGCAGCAGTGGATACTTCGACCATGCAATC TGAGATCAAGAAGGTGGAGCTTGGAACAAGTGAAGATAGTGGTACATTAGAGTTCAACACTCCTCCACCGACAAAGATGGTAGGTGAACATGAAGATGGA AGCTCATTGAGAAGGACCGTCTCTGAAGTCAGTTATTCGGATGATTCTAGAGGAAAATTCTATGAACAGTACATGCTGAAGAGAGATGCAAAACTAAGAA AAGAATGGGGTACAAAAAGAGCAGAGAAGGAAGCTAAGTTGAAGGCCATGCAGGATAGCATTGATCGAAGTAGAGCTGAGATGAAAGCTAAACTCTCGGC ATCTGCAGATAGGCAGGATTCAGGTGCTCGCCGAAGAACAGAGAAACTGAGATCATCCACTGTTCATTTGAGCTTGAAGAAACAACAGCTTCCTGTTGAT ATATTCCGGATTGGAGAGGGCGATTATCTTCCTGAATATTCAGAAAAGTGTTATGAACAAGACAAATCATTTAGCCAGGCAGTTGATGGTGCATCAAGGA CTTCTCAGAACAAAAAGTTCACTCCGAACAGAAATGTATCTTCGTCAACTCCTCGTACTGCAGCAGCACCAGTCCAACGGTCAACTGGGAAAAGTTCCAA CCCAAGCTCTGGACGAAGAAGAGCACAACCCGATAATCATCTTGCACAATCAGTTCCAAACTTCTCCCAGTTCAGGAATGAGAATGCAAAGCCCATTCCT GGAGTTGGCAAGACAGCCAACCGGTCTCAGGTTCGATCGTTCTCTCGTAACAAGAGTAATGTAGAAGATATACCGCTTCCGAAAGAAGATAAAGCTGATG CCATAGTTCTGGATCCATTAAAGTCAGGTAAAGATCAGACTGAGCAGAGTCCTCATGAAAAACTAGTAAAGAACTCGGCATCAAAGACTTTCTTGAAGAA GGGCAATGGGACAGGTCCAGCTGCTGGAGTGAAACTAAAAGCATTAGCCGTCTCTGAGAGTTCAAGTGATGGTGATTTTGAAGAATCTCCATTTCAAATG GAAGATAATATGGAAGTGGCAAGGGATGAAGCAGAGGATCTCGAAACACTAGAGGTGCAAGATGATGTAGATAATGTTAAGTCCAGTCTTAATCAGGACT GTGACAAGGTGGTTATGTCCGGCTCAGACAACAGTGACCCTCTAAGCTCTCAGATCGACATTTCTGCCGAAGTTCCTACAGCTGGGCCGTCAGGGTTTGA CAATGTAGAGTCCCTGCAGGATTCGTCAGGAGAAAGCCCTTTCTCGTGGAATTTACGGATGCATCAACCGTTTTCATATCAACATGAGGCCTCAGACGTT GATGCTTCGGCAGATTCTCCGATCGGGAGCCCTGCATCTTGGAACTCTCATTCGCTAGCTCAAACAGAAGCAGATGCCGCGAGAATGAGAAAGAAGTGGG GGAGTGCTCAGAATCCTGTTCTTGTTAGCTCGTCTCATAACCAGTCCCGGAAAGATTTGACAAATGGGTTCAAAAGGTTGTTAAAGTTTGGAAGGAAAAG TCGAGGTAATGATACTTTGGCTGACTGGATCTCTGCAACAACTTCTGAAGGAGATGATGATACAGAAGATGGTCGAGATCCTGCCAGTCGTTCATCAGAA GACTTGAGGAAGTCCAGGATGGGATTGTCACGCGGTCATCCTTCTGATGATTGCTTCAACGAGGGAGAATTATACAATGAGCAAGTTCAACCAGTGCATA CGTCCATTCCTGCACCTCCAGCCAACTTCAAACTAAGGGATGAACTTATGTCAGGAAGCTCAATAAAAGCACCAAGATCTTCGTTCTTCTCGCTCTCGTC GTTCCGAAGCAAGGGAGCAGGGGAACCGAAGCCACGGTGA
AA sequence Show only first row Show all	>Lus10008140 pacid=23169757 polypeptide=Lus10008140 locus=Lus10008140.g ID=Lus10008140.BGIv1.0 annot-version=v1.0 MKPDTSLDYAVFQLSPKHSRCELFVSRNGITEKLASGLVKPFVTHLKVAEQQVVQAVNLIKLEVGKHRNAETWFTKGTLERFVRFVSTPEVLEIVNKFDA EMSQLEEARKIYSQGDGGQVSGSGEDGTGSFGGADATKKELLRAIDVRLSAVRQDLFTAFSRASAAGFNPETVLELQLFSDCFGAYRLNEACIKFLSLCQ RRVDLTNHIKPCVEDQAVRQSWESDMSIDDPTEGTSGSQFHDGRPHQPSFQGNKHHGSQEEGNLATTAQNQTRQQESSSVKEEDKKEGAVAESSPGQPSQ PSRRLSVQDRINMFETKQKENSGGKPIVVGKSAELRRLPSDVLSAEKAVLRRWSGASDMSIDLGNEKKDSNNTDSPSCTPSSSSAAQAKGTVFPVSSDNS NNLKNIHDPANLVEADSRAVSGIQDQDEAPNLQTHIGDISSRVPNREFGNRVEQIGVRDHMENQSRVRSHGRSLSGQFESGSGGNTKNMLHKESGNDQSS SSQRQWGSFNSEGEQGRKNVISISGRDSTKVENVEVVKIQKPVSSGVEQMNKPQDRKDERAIPYRSNKQVTHSKRISDSLEGHLTAQQPSSVEQFQRVSQ SKGNQELNNELRMKANELEMLFAEHKLRAPGDQSSLNRRNKPIEMQAEEVASSQKKQAAVDTSTMQSEIKKVELGTSEDSGTLEFNTPPPTKMVGEHEDG SSLRRTVSEVSYSDDSRGKFYEQYMLKRDAKLRKEWGTKRAEKEAKLKAMQDSIDRSRAEMKAKLSASADRQDSGARRRTEKLRSSTVHLSLKKQQLPVD IFRIGEGDYLPEYSEKCYEQDKSFSQAVDGASRTSQNKKFTPNRNVSSSTPRTAAAPVQRSTGKSSNPSSGRRRAQPDNHLAQSVPNFSQFRNENAKPIP GVGKTANRSQVRSFSRNKSNVEDIPLPKEDKADAIVLDPLKSGKDQTEQSPHEKLVKNSASKTFLKKGNGTGPAAGVKLKALAVSESSSDGDFEESPFQM EDNMEVARDEAEDLETLEVQDDVDNVKSSLNQDCDKVVMSGSDNSDPLSSQIDISAEVPTAGPSGFDNVESLQDSSGESPFSWNLRMHQPFSYQHEASDV DASADSPIGSPASWNSHSLAQTEADAARMRKKWGSAQNPVLVSSSHNQSRKDLTNGFKRLLKFGRKSRGNDTLADWISATTSEGDDDTEDGRDPASRSSE DLRKSRMGLSRGHPSDDCFNEGELYNEQVQPVHTSIPAPPANFKLRDELMSGSSIKAPRSSFFSLSSFRSKGAGEPKPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	1.0	0.9712
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	2.4	0.9387
AT1G27850			unknown protein		Lus10006433 [exp]	2.8	0.9412
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	3.2	0.9248
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	3.9	0.9065
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	4.5	0.9136
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	5.8	0.8905
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	9.9	0.9218
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	10.2	0.9260
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	10.2	0.9194

Compare expression of checked genes

Lus10008140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.