Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14180 173 / 2e-49 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT1G54060 152 / 3e-42 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G58630 111 / 1e-27 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 100 / 7e-24 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 96 / 2e-22 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 87 / 3e-19 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 83 / 5e-17 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G24860 79 / 3e-16 Trihelix Homeodomain-like superfamily protein (.1) AT3G24490 76 / 6e-15 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT2G44730 67 / 4e-12 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013179 [exp] 496 / 6e-176 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10029889 [exp] 172 / 2e-50 AT3G14180 147 / 1e-40 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 155 / 2e-41 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007273 [exp] 132 / 2e-35 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 121 / 2e-31 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 121 / 2e-31 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 113 / 9e-30 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10024143 [exp] 92 / 4e-20 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1) Lus10028984 [exp] 77 / 6e-17 AT3G14180 86 / 7e-21 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T126206 [exp] 157 / 4e-44 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 157 / 4e-44 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G026000 [exp] 150 / 2e-41 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 125 / 3e-33 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G113600 [exp] 120 / 8e-31 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 117 / 5e-30 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 89 / 1e-19 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 89 / 1e-19 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.001G179800 [exp] 88 / 8e-19 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.010G186200 [exp] 77 / 5e-16 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008141 pacid=23169773 polypeptide=Lus10008141 locus=Lus10008141.g ID=Lus10008141.BGIv1.0 annot-version=v1.0 ATGGACGACGACGCCGGCGACGACGAGATCCAGTCCCCTCGCTCCCCCTCGCCCTACAACGGAAGAATCTCCGTGACAGTCGCAGCCGCAGCTCCTCCTG TTTCCCCGCCGCAACGAGAGCCCAGTCCCTCCGCCGCCTACCACGTACTTGCCCTAGCCGCCGTCCCCAAGACGGTTAACAACGGCAGAGAGGATTGCTG GAGCGAGGGAGCTACGGCGGTGCTGATCGACGCCTGGGCGGAGCGGTACGTCGAGTTGAGCAGAGGGATTCTGAAGCAGCACCACTGGAAAGAAGTCGCC GATGTTGTCAGCAGCCGTGAAGACTACATCAAGCCTCCCAAGACCGACATCCAGTGTAAGAACCGGATCGATACGGTGAAGAAGAAGTACAAATCGGAGA AGGCGAAGATCGACGCCGGCGGTGGCCCTAGTTTGTGGCCGTTCTACCATCGGATTGAGCAGCTGATTGGCCTGAACCCTACGCTGGCATCGAGGAAGCC GTCAGGTACTACCAAAACTCCTGTCTCTGGATCTGTCAGTGGCAGAGTTCCCACCGGAATCCCCGTCGGTAAGCGGAGCAGTTCTCAGAGGCGGCAGCAA CCGTATCAGTTTGGGAATCTCAACCGGATGAATAACGGGAGGCAGAAGGTGAAAACACCGTCGAGGAAAAGAGGCGCGGCGGCAATGTTGATGGATTCTT CATCGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGGAGGAGACGGTGCCGTTTCGCAATTACGATTACGGGTTCCCGGCGGC GAGTAAGAAGAGGAGGATGGAGCAGAATGGAGAAGTTAAAAAGGAGGAAGGAGGAGGATGGGGGGATTCGATTCGGATGCTGACGGCGTCAATAGTGAAG CTTGGAGAAGCTTACGAGCAGACGGAGAAGAAGAAGCTGGAGCAGGTGGTGGAGATGGAGAAGACGAGGATGAAGTTTATGCAGGAGCTAGAGTTGCAGA GGATGCAGTTCTTCATGAAGACACAAATGGAGATTTCCCAGCTCAATAGCAGAAGAAGAATAAGAAGGCAATCTCCATCGCCAGCTCCACCACCACCACC ACCACCAGGTGGTGGAATTGGGATCGTTGCAGCAGCAGCAGCTGCTGCTTCTCCCAATGATGATGATAGTGATGATGAACTCAAGGAGGAGTTGAGTGAG TGA
AA sequence Show only first row Show all	>Lus10008141 pacid=23169773 polypeptide=Lus10008141 locus=Lus10008141.g ID=Lus10008141.BGIv1.0 annot-version=v1.0 MDDDAGDDEIQSPRSPSPYNGRISVTVAAAAPPVSPPQREPSPSAAYHVLALAAVPKTVNNGREDCWSEGATAVLIDAWAERYVELSRGILKQHHWKEVA DVVSSREDYIKPPKTDIQCKNRIDTVKKKYKSEKAKIDAGGGPSLWPFYHRIEQLIGLNPTLASRKPSGTTKTPVSGSVSGRVPTGIPVGKRSSSQRRQQ PYQFGNLNRMNNGRQKVKTPSRKRGAAAMLMDSSSEEEEEEEEEEEEEEEEEETVPFRNYDYGFPAASKKRRMEQNGEVKKEEGGGWGDSIRMLTASIVK LGEAYEQTEKKKLEQVVEMEKTRMKFMQELELQRMQFFMKTQMEISQLNSRRRIRRQSPSPAPPPPPPPGGGIGIVAAAAAAASPNDDDSDDELKEELSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10008141 [exp]	0	1
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10013179 [exp]	1.0	0.8621
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	3.5	0.7791
AT1G27435			unknown protein		Lus10041533 [exp]	3.7	0.7820
AT3G15095		HCF243	high chlorophyll fluorescence ...		Lus10017938 [exp]	10.2	0.6743
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10014843 [exp]	10.2	0.7435
AT5G20130			unknown protein		Lus10037880 [exp]	10.6	0.7178
					Lus10031351 [exp]	20.0	0.7341
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	20.6	0.7191
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	21.2	0.7119
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	21.8	0.7165

Compare expression of checked genes

Lus10008141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.