Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43500 627 / 0 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 614 / 0 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G64530 398 / 8e-125 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 389 / 2e-120 NLP7 NIN like protein 7 (.1) AT1G76350 374 / 3e-116 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 275 / 5e-79 NLP4 Plant regulator RWP-RK family protein (.1.2) AT2G17150 237 / 4e-67 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G35270 242 / 6e-67 NLP2 Plant regulator RWP-RK family protein (.1) AT4G38340 184 / 4e-48 NLP3 Plant regulator RWP-RK family protein (.1) AT5G66990 52 / 7e-07 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019368 [exp] 1587 / 0 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 370 / 4e-113 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10012257 [exp] 368 / 4e-113 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 356 / 2e-108 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 348 / 3e-106 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10014428 [exp] 343 / 1e-104 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 341 / 1e-103 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10013224 [exp] 330 / 1e-100 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 323 / 3e-98 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133400 [exp] 844 / 0 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 822 / 0 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.003G143000 [exp] 423 / 9e-133 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 400 / 5e-124 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.009G166400 [exp] 343 / 2e-103 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 299 / 2e-87 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 297 / 1e-86 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 269 / 1e-76 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 268 / 4e-76 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 253 / 8e-71 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10008143 pacid=23163385 polypeptide=Lus10008143 locus=Lus10008143.g ID=Lus10008143.BGIv1.0 annot-version=v1.0 ATGGAGTACTCATTTTCCCCGAAAGTAAACGGTGACGAATTTTCAGCTGAGATAGCATCTCCAGTAGATGGTCATCCAAGAAATTCAATCTTGGGTGATC CTGGTGACAAATTTTTAGAGCTGATGAATTTGGATACATATCATGGATGGTGTAATGGCTCTTCTGCGATGGAACACATGTTTGCTTCAAATGGGTTATC ATCGTTGCAGCCGTTTCCATTAGGATCTTTCGATACCCTAAATCTTGCTGAACAACCTAGTTATCTTTTCCCTAATGAATCAGATGGTGCGGGTACCTCA CACGATTGTGGAGACAAAATAACCTGTGAGCAAAATGACTCGCAGTTTGTTTATTCATTGCGATTGAGCGCAGGGAATGGTTTTGTTAGCAATGGTTCCA ATCAACAGAAAAATATCATAGAAGAAGACGTTAATTGTCTTGTCTCTTGCCCTGTCCGTTGCTCACTAGATGAGAAAATGTTGAAGGCATTATCTTTTCT CAGAGAGTGTTCTGGAGATGGCATTTTAGCACAAGTTTGGGTTCCAGTAAGGCAGGGGGATCAGTATGTCTTAACAACGTCAAACCAGCCATACTTGCTT GATAAAATTCTAGCAGGGTATCGAGAAGTCTCAAGGACGTTTACCTTCTCTGCAGACTTACAGTCTGGTCTTCCTTTAGGGCTTCCTGGCCGTGTTTTCG TCTCCAAAGTTCCTGAGTGGACCTCAAATATAATTCATTACAGCAAGGCAGAGTATGTGCGGGTGAATCATGCGGTTGACCATGAAGTCCGGGGTTCAGT TGCTTTGCCTATTCTTGAACCTTCCAACATGTCCTGCTGTGCTGTGCTGGAACTTGTCACTATTAAGGAGAAGTCGGATTTTGATTCTGAGATGGAGAAC ATTTGCAACGCACTCCAGGCTGTGAATTTAAGAAGCACTCTACCACCTCGCCTTTCCCAGTTCCTGTCAGGCGATCAGCAAGCTGCTCTTGCTGAAATAA GGGATGTCCTACAAGCAGTATGCCACGCGCATAAATTGCCTTTAGCTCTAACTTGGATTCCTTGCAATTATACGGAGGGATCTCCAGATAAAATCGAAAG AGTATGTGTAAGAGAAGGAGATTCACGGCCTACTGGAAAATATGTATTGTGCATAGAAGATGCAGCTTGTTATGTGAATGACATATCAATGCAAGGATTT GTGCATGTTTGTGTGGAGCATTATATTGAAGAAGGGCAAGGCATTTCTGGAAAAGCACTTCAATCAAATCACCCGTACTTCATCCCAGATGTGAAGACAT ATGACATATCTGAGTATCCACTTGTCCATCACACCCGTAAATATGGGTTAAATGCTGCAGTTGCTATCAGGCTAAGAAGCACCTACACTGGTGACCATGA CTATATCCTGGAACTCTTTCTGCCTGTCAACATAACAGGGAGTCAGGAGCAGCAACTCTTGTTGAACAACCTGTCAAGTACAATGCAAAAGATCTGTAGG AGCTTGAGAACAGTTTCCGATGCAGAATTAGCTGCTGGTGTAGGTAATGGACTTGGATATCAAAAGGAATCGATTCCAATCTTCCCAGAAATCTCAATAT CGGAGAGAAACTCTAACAGCCTGTTATCAAGTGTTTTGAACACTGCGGGTAAGATGGATTTCAATGCATCCAGCTCTAGAATGAACAGAACAGAATCTCG GGCAATGGCTGGATCCAGAAAACAGTTGGACAAGAAAAGAAGCACTGGTGAGAAGACTGTGAGCTTAAGTGTTCTTCAACAATACTTCTCCGGAAGCCTC AAGGATGCTGCCAAAAGCATTGGGGTTTGCCCTACAACATTGAAAAGGATATGCAGACAACATGGAATATCAAGATGGCCATCCCGAAAGATAAACAAAG TGAACCGTTCGTTAAGGAAAATCCAAATTGTACTTGATTCAGTTCAAGGTGTAGAAGGAGGATTGAAATTTGACCCTGGAACGGGCGGATTTATGGCAGC TGGGGACATGCTGGATGAATTTGATTCAGATGGAAGAACTCTCTTTCCTAATAACAATATTCCTGCTCAACATTCAGAACCATTGGCTGAATGTGTTGCT GCCGAGGGTAGTACTTCGACCGATAAAGTTGATGACAGTTCTACAGCCACTGTTTGGAAAGTGGCAAAAAAAACTAGCTCGCCTTTGGTTTACGCAAGTG AGGATTCCAAGTCTCAACTATTCAGTTTTCATGAAGCCACGTCCCCTCCTTGTTGGTTTGCAGGAGATGCGGAAGCTGAGAAAACAAGTTCCCAGCATCG ATCTTGGAGCTCGAGCTCCTTGGCTGGTGGAGATGAGAACAACACAATTGACCATGACCAGAATGTTTGTTCCAGCTCATCACATGGGTCTGAATCTCCT GCAATGCCTGGGTGCAGTTCAAGCTCTCAGAGGCTTAAGGAGGGTAGGCATCCAAGAAGCCAAGGGCATAGTAGCGGGTGGAAGATCACTATGAAGGCTA CTTATAAAGAAGACACAATCAGGTTCAAGTTTGAATCCCGTGCAGGGTGTTTTCAGCTATACGAAGAAGTTGGAAAGAGATTCAAACTGCAAACGGGGAC ATTCCAGCTCAAGTACCTGGACGACGAAGAAGAGTGGGTGTTGCTGACAAGCGACTCCGACCTGCAGGAGTGCTGTGAAATATTGGATTACACTGGGAAG GAAAGCGTGAAGTTAGCAGTGCAGGATACACCCTTCGTGACTGGAAGCTCGGGGAGCAGCAATTGCTTTTTGGCAGGAAGCTCATAG
AA sequence Show only first row Show all	>Lus10008143 pacid=23163385 polypeptide=Lus10008143 locus=Lus10008143.g ID=Lus10008143.BGIv1.0 annot-version=v1.0 MEYSFSPKVNGDEFSAEIASPVDGHPRNSILGDPGDKFLELMNLDTYHGWCNGSSAMEHMFASNGLSSLQPFPLGSFDTLNLAEQPSYLFPNESDGAGTS HDCGDKITCEQNDSQFVYSLRLSAGNGFVSNGSNQQKNIIEEDVNCLVSCPVRCSLDEKMLKALSFLRECSGDGILAQVWVPVRQGDQYVLTTSNQPYLL DKILAGYREVSRTFTFSADLQSGLPLGLPGRVFVSKVPEWTSNIIHYSKAEYVRVNHAVDHEVRGSVALPILEPSNMSCCAVLELVTIKEKSDFDSEMEN ICNALQAVNLRSTLPPRLSQFLSGDQQAALAEIRDVLQAVCHAHKLPLALTWIPCNYTEGSPDKIERVCVREGDSRPTGKYVLCIEDAACYVNDISMQGF VHVCVEHYIEEGQGISGKALQSNHPYFIPDVKTYDISEYPLVHHTRKYGLNAAVAIRLRSTYTGDHDYILELFLPVNITGSQEQQLLLNNLSSTMQKICR SLRTVSDAELAAGVGNGLGYQKESIPIFPEISISERNSNSLLSSVLNTAGKMDFNASSSRMNRTESRAMAGSRKQLDKKRSTGEKTVSLSVLQQYFSGSL KDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQIVLDSVQGVEGGLKFDPGTGGFMAAGDMLDEFDSDGRTLFPNNNIPAQHSEPLAECVA AEGSTSTDKVDDSSTATVWKVAKKTSSPLVYASEDSKSQLFSFHEATSPPCWFAGDAEAEKTSSQHRSWSSSSLAGGDENNTIDHDQNVCSSSSHGSESP AMPGCSSSSQRLKEGRHPRSQGHSSGWKITMKATYKEDTIRFKFESRAGCFQLYEEVGKRFKLQTGTFQLKYLDDEEEWVLLTSDSDLQECCEILDYTGK ESVKLAVQDTPFVTGSSGSSNCFLAGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	0	1
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	2.2	0.8157
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	2.4	0.8569
AT3G62010			unknown protein		Lus10038011 [exp]	2.6	0.7908
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Lus10019368 [exp]	2.8	0.7900
AT4G10930			unknown protein		Lus10032402 [exp]	4.0	0.8444
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	6.0	0.8329
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006094 [exp]	7.7	0.7706
					Lus10027142 [exp]	8.0	0.8239
AT2G39580			unknown protein		Lus10005958 [exp]	17.1	0.8048
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	27.0	0.7712

Compare expression of checked genes

Lus10008143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.