Plant FIBer expression Database

Lus10008144 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17930 52 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1)
AT2G04865 51 / 8e-08 Aminotransferase-like, plant mobile domain family protein (.1)
AT2G25010 45 / 5e-06 Aminotransferase-like, plant mobile domain family protein (.1)
AT1G48120 42 / 0.0001 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002099
[exp]
143 / 4e-44 ND 39 / 7e-04
Lus10033258
[exp]
127 / 2e-38 AT1G17930 56 / 3e-10 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10023395
[exp]
122 / 2e-35 AT1G17930 52 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10009805
[exp]
109 / 1e-29 AT2G25010 54 / 6e-08 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10008465
[exp]
77 / 3e-18 AT2G04865 49 / 2e-07 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10020970
[exp]
74 / 9e-16 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10027047
[exp]
68 / 9e-14 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10032799
[exp]
64 / 2e-13 AT2G04865 64 / 6e-13 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10007213
[exp]
58 / 7e-11 AT1G17020 119 / 9e-33 senescence-related gene 1 (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10536 PMD Plant mobile domain
Representative CDS sequence
>Lus10008144 pacid=23163380 polypeptide=Lus10008144 locus=Lus10008144.g ID=Lus10008144.BGIv1.0 annot-version=v1.0
ATGCCATTCAGAGAGATGACGATTACCGTACATGATGTGTTGTACCTACTCAGGATTCCCATTCGGGACACCCAGCTTAGTTCGAAGGGCAAGAAGTCGT
ACGTGACGCAGCTTGCCACCATGCTTAATGTTGATGGTGATGAGATCAGGAAGAATTTCTACAGGGCAGGCGGTTTTCATCTAGACCACCTAGTCAAGGC
CGTCAAGATAGGATACCTTAACGATGTGAGCATAGCCGTTTGCTACCTGATTGCGTTGTTGGGCTCCACTATTTTTTCGGACCGCATTAAGAACCGTGTT
TGTATTTGGGTTCTCGAGGGGTTGCAAGACGTGCGGATGACTAGTGAGTACAGTTGGGGTGCGGCTACACTTGCTTTCCTCTACAGGCAGATCGGGGTTG
CTTCTCGTGCGCGATCTACATCCCTGTCTGCTGCCTTACTTTGCTGCAGTCGTGGATCTACGAGTACTTCCCGAGCTTACGTCGTAGTCCATCCCTGA
AA sequence
>Lus10008144 pacid=23163380 polypeptide=Lus10008144 locus=Lus10008144.g ID=Lus10008144.BGIv1.0 annot-version=v1.0
MPFREMTITVHDVLYLLRIPIRDTQLSSKGKKSYVTQLATMLNVDGDEIRKNFYRAGGFHLDHLVKAVKIGYLNDVSIAVCYLIALLGSTIFSDRIKNRV
CIWVLEGLQDVRMTSEYSWGAATLAFLYRQIGVASRARSTSLSAALLCCSRGSTSTSRAYVVVHP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G17930 Aminotransferase-like, plant m... Lus10008144
[exp]
0 1

Lus10008144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.