Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031757 [exp] 122 / 2e-34 ND 39 / 0.002 Lus10010518 [exp] 105 / 6e-28 ND / Lus10001095 [exp] 94 / 9e-24 ND 38 / 0.002 Lus10040056 [exp] 88 / 1e-21 AT5G28823 41 / 2e-04 unknown protein Lus10026443 [exp] 83 / 4e-19 ND / Lus10040594 [exp] 82 / 6e-19 ND / Lus10004792 [exp] 83 / 2e-18 ND / Lus10035002 [exp] 66 / 2e-13 AT2G01050 39 / 0.001 zinc ion binding;nucleic acid binding (.1) Lus10007392 [exp] 64 / 1e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008146 pacid=23163389 polypeptide=Lus10008146 locus=Lus10008146.g ID=Lus10008146.BGIv1.0 annot-version=v1.0 ATGAAGAAATTAAGAGATTCGACTGGCTCTTTGGCTCCTTCTTCTGGCCGGTCAGCTATTCCTCAGTCTGCTTCTCCGGCGATAGTTAGGATAGCTGTCC CTGCTACCACCCTATATGTATCTGTACCGGAGAGGATTTGTCAAATCGGATCTGGATTGGAAAAGGGGAAGGGAATTTCTAGTAGTTCAGCGGCTCCGGT GGTTGCTTATGCGCCATCGGATGGAACGGCTTCGGCGGAGTTTGACCCTGGATCTGATCGTGGAGCAGCAAAAGATTGGCATGTTCATCATGCTGCTATG GTGCTAAGGCGTTGGGAATTGGGCATTTTGCCTTTGGATCTGGAGGAGAAAGCAGTCCCTACATGGATCTCCATTTCTGGTCTCCCCCCTCATTTGCTCA CTGATGACGGTATTAGATGGATCATTAGTCGCTACGGTCGGCCGCTTAACAAGTTTGTTAGAGAGCGCCTGGTTGCGAAACTATGTATTCTCCTTGATAA GGGTAAAAGTTGTCCAGAGGATCTCATAATATGGGTTGATGAAGTTCAAGTTTGCATTAAGGTTAATACCCATCAGAGTCGAGTTTACTCAAAAGGAAAA ATGATTATTCAGCCAAAGCAACCATATTGGAGAGAAGTTAAAAAGAGTAGCCTAGCCATCTCTTATTGTGACTCAGGGGACTCCTTCAGGCAATATTCTT GA
AA sequence Show only first row Show all	>Lus10008146 pacid=23163389 polypeptide=Lus10008146 locus=Lus10008146.g ID=Lus10008146.BGIv1.0 annot-version=v1.0 MKKLRDSTGSLAPSSGRSAIPQSASPAIVRIAVPATTLYVSVPERICQIGSGLEKGKGISSSSAAPVVAYAPSDGTASAEFDPGSDRGAAKDWHVHHAAM VLRRWELGILPLDLEEKAVPTWISISGLPPHLLTDDGIRWIISRYGRPLNKFVRERLVAKLCILLDKGKSCPEDLIIWVDEVQVCIKVNTHQSRVYSKGK MIIQPKQPYWREVKKSSLAISYCDSGDSFRQYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008146 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	1.0	0.7861
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	5.5	0.7079
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	7.6	0.7493
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	10.2	0.7185
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10017545 [exp]	18.3	0.6677
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	21.6	0.7391
AT2G42780			unknown protein		Lus10010947 [exp]	31.9	0.6984
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10024034 [exp]	34.6	0.6712
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	35.0	0.6892
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	36.2	0.6878

Compare expression of checked genes

Lus10008146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.