Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30710 600 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT1G04830 117 / 3e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G13730 104 / 5e-24 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT3G07890 83 / 6e-17 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G02460 81 / 2e-16 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 77 / 5e-15 PAM1 plant adhesion molecule 1 (.1) AT2G43490 77 / 7e-15 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 77 / 9e-15 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G37290 72 / 6e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 67 / 1e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019370 [exp] 602 / 0 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 520 / 0 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019369 [exp] 229 / 4e-74 AT2G30710 83 / 9e-20 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10017104 [exp] 105 / 4e-24 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 95 / 1e-20 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10004802 [exp] 86 / 2e-17 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10006410 [exp] 77 / 6e-15 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 77 / 8e-15 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10003047 [exp] 76 / 1e-14 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134200 [exp] 639 / 0 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G131300 [exp] 99 / 5e-22 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 97 / 2e-21 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 96 / 3e-21 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 96 / 5e-21 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G023200 [exp] 82 / 3e-16 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.007G132900 [exp] 81 / 7e-16 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.002G218100 [exp] 77 / 4e-15 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.017G109000 [exp] 76 / 1e-14 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.014G163400 [exp] 76 / 1e-14 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10008148 pacid=23163381 polypeptide=Lus10008148 locus=Lus10008148.g ID=Lus10008148.BGIv1.0 annot-version=v1.0 ATGTTAAAAGGGCGTAGTATTCCCGGTAAAGTCTTGCTAACCCGGAAGTCACCATCAGAGGATCCAAGTTTACAAGAACATTCTCCAACCTTTCAAAGAA GCTACTCAGAAAATGACGCTGATACAAGTAATCAGAGTGACACATCAAGAGAGGAAGATGCGTGGAGTGCAAATAAACCAAATAGTATTTCTGTTGCCAA CAAATTAAAACCCCGTACTTCCAGTGTTGAGGTTTCACATGGAGAAGGTCAGAAGTCAACTGTGGGTGCTAGAGCAACCGATAATGCCAGAGTTATGAAG TTCACTAAAGAACTATCAGGAGCTACTGTAATGTTAGAGAAACTTCGCGAGTTAGCTTGGAGTGGTGTACCACCTTATATGCGGCCTGATGTTTGGAGGC TTCTCTTGGTTTCACATGGAGAAGGTCAGAAGTCAACTGTGGGTGCTAGAGCAACCGATAATGCCAGAGTTATGAAGTTCACTAAAGAACTATCAGGAGC TACTGTAATGTTAGAGAAACTTCGCGAGTTAGCTTGGAGTGGTGTACCACCTTATATGCGGCCTGATGTTTGGAGGCTTCTCTTGGGATATGCACCATCT AATTCAGATAGAAGGGATGTAGTACTGAGAAGAAAGCGATTGGAGTATCTTGAATGCGTTGCTCAATTTTATGACATTCCTGATTCTGATCGTTCTGATG ATGAACTAAACATGCTTCGTCAGATTGCTGTTGACTGTCCAAGAACTGTACCTGATGTCACATTCTTTCAGCAAACACAAGTTCAAAAATCCTTGGAGCG CATTCTTTATACATGGGCCATTCGGCATCCGGCAAGTGGATATGTTCAGGGTATAAATGATCTCGCGACGCCATTTCTGATAGTGTTCCTGTCCGAACAC TTGGAGGGAGATATAGATAATTGGTCTATTTGCGATCTCTCTAGTGAGAAAATCTTTGACGTGGAAGCTGACTGTTACTGGTGCCTGTCAAAGTTACTAG ATGGGATGCAAGATCATTACACATTTGCGCAGCCGGGAATACAGAGGCTTGTGTTTAGGCTGAAAGAATTGGTTAGACGCATAGATGAATCTGTTTCAGC GCATATGGAAGAGCAAGGGCTTGAATTTCTTCAATTTGCATTTCGATGGTTTAACTGTCTGTTGATAAGGGAGATCCCTTTTAATCTTGTAACAAGGCTG TGGGACACCTACCTAGCTGAAGGAGATACGTTGCCTGATTTCCTAGTGTACATATTCGCCAGCTTTCTTCTGACGTGGTCAGAGAAGCTTCAGAAACTTG ATTTCCAGGAGCTGGTAATGTTTCTGCAGCACCTACCCACACGTAACTGGAGTCATCAGGAGCTAGAGATGGTGCTATCAAGAGCTTTTATGTGGCATAG TATGTTTAACAACTCTCCTAGCCACTTGGCTAGCTAA
AA sequence Show only first row Show all	>Lus10008148 pacid=23163381 polypeptide=Lus10008148 locus=Lus10008148.g ID=Lus10008148.BGIv1.0 annot-version=v1.0 MLKGRSIPGKVLLTRKSPSEDPSLQEHSPTFQRSYSENDADTSNQSDTSREEDAWSANKPNSISVANKLKPRTSSVEVSHGEGQKSTVGARATDNARVMK FTKELSGATVMLEKLRELAWSGVPPYMRPDVWRLLLVSHGEGQKSTVGARATDNARVMKFTKELSGATVMLEKLRELAWSGVPPYMRPDVWRLLLGYAPS NSDRRDVVLRRKRLEYLECVAQFYDIPDSDRSDDELNMLRQIAVDCPRTVPDVTFFQQTQVQKSLERILYTWAIRHPASGYVQGINDLATPFLIVFLSEH LEGDIDNWSICDLSSEKIFDVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFRLKELVRRIDESVSAHMEEQGLEFLQFAFRWFNCLLIREIPFNLVTRL WDTYLAEGDTLPDFLVYIFASFLLTWSEKLQKLDFQELVMFLQHLPTRNWSHQELEMVLSRAFMWHSMFNNSPSHLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	0	1
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031275 [exp]	2.0	0.7767
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10010471 [exp]	3.5	0.7499
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10019370 [exp]	11.4	0.7963
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10007963 [exp]	18.4	0.7443
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	21.8	0.7191
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10032478 [exp]	23.7	0.7155
AT2G41150			unknown protein		Lus10022403 [exp]	29.3	0.7462
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10028185 [exp]	30.6	0.6430
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	34.3	0.6761
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	46.8	0.7167

Compare expression of checked genes

Lus10008148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.