Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043183 [exp] 54 / 8e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008149 pacid=23163388 polypeptide=Lus10008149 locus=Lus10008149.g ID=Lus10008149.BGIv1.0 annot-version=v1.0 ATGGCCGCTCTCATCATCGATTGCGGTGGTTCTGCAAGAGAGTCGTCGGAAGGTTTCCGTCAGTTAACCGCCAAAAAGGATAGCCTTCATACTACGAATG ATGAGTTTGAGGATGCATTGTTCAACATGGGGGTTCATCTGACTCGTAGGACGGTTGCCTACAAGCAGTATTCTTCCGGTGAAGAAGTCGAGCAAGTACT CCAATCTGGTAGGAGCTCTGACCCAAATGTACATCAAAGGTCTGATCCAGCAGTAGCACCTCTATGTCCTGGACTGAATCCAATTGCAGCCCATACAAGC CATCCACCCCAGGCAAGCGAAACCCAACAAGAGGACTTCATCCAAAACGAGGATGACTTAGTAGTTCCCAACACTACCTCAGGTGAAGACGGCGGCTCAA GTTACATGGGTTCAGAAGATTCCAACCACATCTGTGGTAACGTCTCTGACGAAGCTGGAATAGAAGACATATATGATGGAGCACCCGTTTATGATCCAGG ATGCGACTATAGATACCTGGTCTTTACCTTGGGCATGAAGTTCCATTCCCCAAGGAAATTCAAGCATGTAATGACAAAAGCATGCTATCTATGA
AA sequence Show only first row Show all	>Lus10008149 pacid=23163388 polypeptide=Lus10008149 locus=Lus10008149.g ID=Lus10008149.BGIv1.0 annot-version=v1.0 MAALIIDCGGSARESSEGFRQLTAKKDSLHTTNDEFEDALFNMGVHLTRRTVAYKQYSSGEEVEQVLQSGRSSDPNVHQRSDPAVAPLCPGLNPIAAHTS HPPQASETQQEDFIQNEDDLVVPNTTSGEDGGSSYMGSEDSNHICGNVSDEAGIEDIYDGAPVYDPGCDYRYLVFTLGMKFHSPRKFKHVMTKACYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008149 [exp]	0	1
AT5G11030		ALF4	aberrant lateral root formatio...		Lus10006197 [exp]	5.5	0.8314
AT2G20830			transferases;folic acid bindin...		Lus10018557 [exp]	6.9	0.7788
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10000126 [exp]	8.9	0.8528
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	9.2	0.8182
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	9.3	0.8302
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	11.7	0.7776
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Lus10027619 [exp]	14.6	0.7420
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	15.2	0.8148
AT5G22040			unknown protein		Lus10000457 [exp]	15.9	0.7847
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	18.7	0.7899

Compare expression of checked genes

Lus10008149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.