Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59530 612 / 0 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT1G08470 300 / 1e-98 SSL3 strictosidine synthase-like 3 (.1) AT5G22020 294 / 2e-96 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 290 / 4e-95 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 235 / 9e-74 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 232 / 4e-72 SSL1 strictosidine synthase-like 1 (.1) AT3G57010 229 / 3e-71 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41290 228 / 5e-71 SSL2 strictosidine synthase-like 2 (.1) AT1G74020 166 / 1e-47 SS2 strictosidine synthase 2 (.1) AT1G74010 162 / 2e-46 Calcium-dependent phosphotriesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019377 [exp] 849 / 0 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10008451 [exp] 282 / 1e-91 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10013370 [exp] 247 / 2e-78 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10012095 [exp] 218 / 2e-67 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10034411 [exp] 180 / 1e-53 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006331 [exp] 172 / 4e-50 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 164 / 1e-46 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10029599 [exp] 162 / 3e-46 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009646 [exp] 152 / 2e-41 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G130700 [exp] 664 / 0 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 644 / 0 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.001G214500 [exp] 300 / 1e-98 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.006G040900 [exp] 292 / 1e-95 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 284 / 1e-92 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.016G037700 [exp] 268 / 5e-86 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.T015518 [exp] 231 / 2e-72 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.008G109966 [exp] 231 / 2e-72 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 151 / 3e-42 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.015G037700 [exp] 144 / 2e-39 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10008151 pacid=23163383 polypeptide=Lus10008151 locus=Lus10008151.g ID=Lus10008151.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGAAGAAGAATATAATAAACGGATCATCATCATCATGGTTAGGGAGGGTGATGATCTTGTTACAGCACCCGATTGGGGTAGCGGTCATGA GCTTCGCGGTGGGGTTTGTGGTGATGGACCCATTGAAGATGGGGCCAATAGGAGAGCATGAGTTCAGGCCGGTGAAGCACGAAATAGCCCATTACGAGGA CGTGATGAAGACTTGGCCTAGAGACAACGGGAGTCGATTGGGGAAAGAAGGCAAGTTGGAGTTTGTAGACCAAGTCTATGGACCGGAGTCGCTCGAGTTT GATGTCAATGGGAATGGCCCTTACACTGGCTTAGCTGATGGCCGCATTGTCAGATGGATGGGTCACCAACTTGGTTGGGAAACGTTTGCACTCGTCACAC ATACATGGTCGGAGAAGAGGTGTGGAAGAGGGGCAGATTCAACAACTGCAAAGCAATGGAAGTACGAGAAGGAGTGCGGGAGGCCATTGGGATTGAGGTT CAACAAGGCAACTGGAGATCTTTATATTGCAGATGCCTATTACGGGCTTCTCGTCGTTGGCCCTCAAGGAGGAATAGCAACCCCTCTTGCTACTCATGAT GTTCATTCTCAACCTATTCTTTTTGCCAATGATCTCGATATTCATTCCAACGGCTCTGTTTTCTTCACTGACACTAGCAAACGATACGACCGCGTGAGTC ATTTCTTCATACTGTTGGAAGGAGAAGCAACTGGTAGACTCCTTCGTTATGATCCTCCGACCAATCAAACTCATGTCGTTGTCGACGGCCTTGCATTCCC TAACGGTGTCCAATTATCTCCTGACCAGACATTCCTTCTCTTTACAGAGACTACCAATTGCAGGCTAATGAAGTATTGGCTGGAGGGATCAAAAAGTGGA ACTGTCGAACACGTAGCTGATTTACCAGGTTTCCCGGACAATGTCCGATCCAACGAAAAAGGACAATACTGGGTCGCCATAGACTGCTGCAGAACTGCAG CACAAGAAGTGCTCACTCACAATCCGTGGATGCGGAGTGTCTACTTTCGGCTCCCCCTTAGGATGAGCTTGCTTGCCAGGATCATGGGCATGAAGATGTA CACAGTGATAGCACTTTTCGACCACAACGGCCAAGTCCTGGAGGTGCTTGAAGATCCTAAAGGGATGGTTATGAAGTTGGTCAGTGAAGTGAGGGAAGTG GATGGGAAATTATGGATCGGAACTGTGGCTCATAACCATATTGCTACCCTATCCTATCCTTCTTCAAGCTAG
AA sequence Show only first row Show all	>Lus10008151 pacid=23163383 polypeptide=Lus10008151 locus=Lus10008151.g ID=Lus10008151.BGIv1.0 annot-version=v1.0 MEEKKKNIINGSSSSWLGRVMILLQHPIGVAVMSFAVGFVVMDPLKMGPIGEHEFRPVKHEIAHYEDVMKTWPRDNGSRLGKEGKLEFVDQVYGPESLEF DVNGNGPYTGLADGRIVRWMGHQLGWETFALVTHTWSEKRCGRGADSTTAKQWKYEKECGRPLGLRFNKATGDLYIADAYYGLLVVGPQGGIATPLATHD VHSQPILFANDLDIHSNGSVFFTDTSKRYDRVSHFFILLEGEATGRLLRYDPPTNQTHVVVDGLAFPNGVQLSPDQTFLLFTETTNCRLMKYWLEGSKSG TVEHVADLPGFPDNVRSNEKGQYWVAIDCCRTAAQEVLTHNPWMRSVYFRLPLRMSLLARIMGMKMYTVIALFDHNGQVLEVLEDPKGMVMKLVSEVREV DGKLWIGTVAHNHIATLSYPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	0	1
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	1.0	0.9720
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	1.4	0.9696
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	1.7	0.9683
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	2.2	0.9590
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	4.0	0.9477
					Lus10016571 [exp]	5.5	0.9589
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	7.0	0.9544
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10020657 [exp]	7.5	0.9062
AT1G76250			unknown protein		Lus10012274 [exp]	8.5	0.9591
					Lus10005454 [exp]	12.3	0.9120

Compare expression of checked genes

Lus10008151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.