Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06050 360 / 2e-125 Protein of unknown function (DUF1336) (.1) AT5G10750 261 / 1e-86 Protein of unknown function (DUF1336) (.1) AT5G24990 214 / 3e-68 Protein of unknown function (DUF1336) (.1) AT5G25010 212 / 2e-67 Protein of unknown function (DUF1336) (.1) AT5G35180 189 / 9e-55 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G25020 176 / 8e-54 Protein of unknown function (DUF1336) (.1) AT5G45560 181 / 8e-52 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 181 / 9e-52 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT2G28320 166 / 1e-46 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 159 / 6e-44 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005308 [exp] 246 / 5e-81 AT1G06050 191 / 3e-59 Protein of unknown function (DUF1336) (.1) Lus10042428 [exp] 245 / 6e-80 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10026242 [exp] 244 / 9e-80 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1) Lus10026907 [exp] 234 / 5e-76 AT5G10750 416 / 1e-147 Protein of unknown function (DUF1336) (.1) Lus10040015 [exp] 197 / 1e-57 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 194 / 2e-56 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 189 / 1e-55 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10007596 [exp] 181 / 8e-52 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 180 / 2e-51 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G130400 [exp] 422 / 8e-150 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 412 / 6e-146 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.018G014234 [exp] 249 / 9e-82 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.018G113100 [exp] 191 / 2e-55 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.003G100600 [exp] 182 / 3e-52 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 181 / 6e-52 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 174 / 4e-49 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.010G223400 [exp] 171 / 3e-48 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 168 / 4e-47 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.008G038800 [exp] 167 / 7e-47 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10008154 pacid=23163378 polypeptide=Lus10008154 locus=Lus10008154.g ID=Lus10008154.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAGGAGGAGAAGAAAGAGCAAGAGTTATGGATGGAGAGAGTAAAATCAGGAGGATCTGTTCCACTGCTGGATCCAGAGAATTGCTCCAATG GTTGGGCATCTCCACCTGGAAACAAGTTCATGGTGAGAGGCTCCGATTACTTGACGACTAAGGTTAAAATTCCAGCCGGCGATTACCTGTTGAAGCCAAT TGGGTTTGATTGGATCAAGGGTTCGACCAAGGTGTTCGAAGTTCTCAAGGATCCAAATAGTAGGTTCAGGAGGTCTACTATGAAGGCATACCCAGATGAT AATGATAAACCTTTACCTTTTATATGGGCATTCAATCTGCAGGTTCCTAGTAAGGACAATTACAGTGCTGTGGCTTATTTTGCAGCCATTGATCCAATCC CGGAAGGTTCCTTAATGGATAGGTTCTTGAAAGGGGATGATGGGTTCAGGAATTCGCGGCTGAAACTGATTGCAAACATTGTGAAAGGTCCATGGATAGT GCGAAAGGCGGTAGGGGAGCAGGCTGTTTGCTTGATAGGGAGAGCACTGTCCTGCAAGTACTGTGTTGGGGAGAGGTTTATGGAGGTGGATGTGGATATT GGTTCTTCAGTTGTGGCTAATGCAATAGTTCATCTTGCATTTGGTTACATCACTGTGCTGACTGTTGATCTTGGTTTTGTCATCGAGGGCTTAACTGAGT CCGAGCTTCCAGAGAAGCTCTTGGGTGCTTTTAGATTATCGGAACTGGACCCAGGTTCCGCTTCCACACTGACACCATCACTGCCCCGCAGCAGCGATTT GAATGGACAGTCTTCGCTGCCAACCCGGTTGTGGAAGTCGATCGGGCAGGGGTTTCCTCAACTTCATCATCCTCAGGCTGATTAA
AA sequence Show only first row Show all	>Lus10008154 pacid=23163378 polypeptide=Lus10008154 locus=Lus10008154.g ID=Lus10008154.BGIv1.0 annot-version=v1.0 MEEEEEKKEQELWMERVKSGGSVPLLDPENCSNGWASPPGNKFMVRGSDYLTTKVKIPAGDYLLKPIGFDWIKGSTKVFEVLKDPNSRFRRSTMKAYPDD NDKPLPFIWAFNLQVPSKDNYSAVAYFAAIDPIPEGSLMDRFLKGDDGFRNSRLKLIANIVKGPWIVRKAVGEQAVCLIGRALSCKYCVGERFMEVDVDI GSSVVANAIVHLAFGYITVLTVDLGFVIEGLTESELPEKLLGAFRLSELDPGSASTLTPSLPRSSDLNGQSSLPTRLWKSIGQGFPQLHHPQAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06050			Protein of unknown function (D...		Lus10008154 [exp]	0	1
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	4.8	0.7990
AT4G40030			Histone superfamily protein (....		Lus10012757 [exp]	6.3	0.7604
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	10.4	0.7738
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	13.0	0.7034
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	14.8	0.7867
AT5G60335			Thioesterase superfamily prote...		Lus10028483 [exp]	15.1	0.7681
AT1G11340			S-locus lectin protein kinase ...		Lus10007601 [exp]	18.7	0.7296
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10012592 [exp]	19.6	0.6908
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	20.4	0.7281
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	24.1	0.7554

Compare expression of checked genes

Lus10008154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.