Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59520 428 / 3e-153 ATRBL13 RHOMBOID-like protein 13 (.1) AT3G58460 54 / 3e-08 ATRBL15 RHOMBOID-like protein 15 (.1.2) AT3G17611 53 / 6e-08 ATRBL14 RHOMBOID-like protein 14 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005310 [exp] 356 / 9e-126 AT3G59520 326 / 3e-114 RHOMBOID-like protein 13 (.1) Lus10032095 [exp] 55 / 2e-08 AT3G17611 339 / 2e-116 RHOMBOID-like protein 14 (.1.2.3) Lus10014591 [exp] 52 / 3e-07 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10021092 [exp] 51 / 5e-07 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10017221 [exp] 48 / 4e-06 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027800 [exp] 447 / 7e-161 AT3G59520 434 / 1e-155 RHOMBOID-like protein 13 (.1) Potri.007G130300 [exp] 444 / 2e-159 AT3G59520 441 / 1e-158 RHOMBOID-like protein 13 (.1) Potri.006G197900 [exp] 58 / 2e-09 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2) Potri.010G004600 [exp] 48 / 3e-06 AT3G17611 352 / 4e-121 RHOMBOID-like protein 14 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10008156 pacid=23163384 polypeptide=Lus10008156 locus=Lus10008156.g ID=Lus10008156.BGIv1.0 annot-version=v1.0 ATGGGGAGGCCACTGTTCTATGAGATACTGGAAAAACCGGTCACGAGTTGCATTATAGCTGTATGCTCTGCAATATGGTTTTACATACAAAAGAAAAACC TTGGCTATACACATGTTGGCTCGAGTTATGAAACAGCATTAGAGGGGCACCATTGGAGGATAATTACTTCAGCATTTTCGCATATCAGTGTTATTCATCT AGCATTTAATATGAGTTCACTCTGGAGTCTTGGCGTAGTGGAACAGTTGGGTCATATCGGCCTTGGTTCTGTGTATTATCTGCAGTACACACTTGTGTTA GTAATCCTGTCGGGCATACTAGTGATTTTGATGTATCACATTTTGATAGAGAGGTTCAAAGTGGAGTATTTTCGAAGGGTAACTGCTGTGGGGTATTCTT GCGTTGTGTTTGGCTGGATGACTATTCTCTCAGTGAAACAGCCATCGACAAAGTTGAACCTTTTCGGTCTTCTTTCACTCCCCATCAGTTTTGCGCCCTT CGAGTCATTGATTTTCACTTCCATAATTGTTCCACAAGCAAGTTTCCTGGGCCACTTATCAGGAATAATCATTGGATATGCTATTGCATGGGGGTTGATT CGCGGGATGAACAACTATTGGGCAGTATCAATGCTGGGATGGATTGCAGTTGTGTTTGTGACAAGTCTGAAGAAGTCTGGGGCTTATGATTTTAATTTTC TGGAGATTGAGTCTGTGACGGATCCTTCAATGCCTTCTGTGCGGTTTCCGGGGAATGGTAGAGTATCGCAGATGAGTTTGCTTCCAGTTGTGGGTACTGA GCGTATTTAA
AA sequence Show only first row Show all	>Lus10008156 pacid=23163384 polypeptide=Lus10008156 locus=Lus10008156.g ID=Lus10008156.BGIv1.0 annot-version=v1.0 MGRPLFYEILEKPVTSCIIAVCSAIWFYIQKKNLGYTHVGSSYETALEGHHWRIITSAFSHISVIHLAFNMSSLWSLGVVEQLGHIGLGSVYYLQYTLVL VILSGILVILMYHILIERFKVEYFRRVTAVGYSCVVFGWMTILSVKQPSTKLNLFGLLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIIGYAIAWGLI RGMNNYWAVSMLGWIAVVFVTSLKKSGAYDFNFLEIESVTDPSMPSVRFPGNGRVSQMSLLPVVGTERI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	0	1
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	1.0	0.8350
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	3.2	0.8219
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	4.0	0.7953
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030139 [exp]	6.0	0.8146
AT2G20940			Protein of unknown function (D...		Lus10034474 [exp]	8.8	0.7710
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	9.2	0.7571
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	9.5	0.8199
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	10.0	0.7763
AT4G18372			Small nuclear ribonucleoprotei...		Lus10000241 [exp]	10.2	0.7651
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	11.0	0.7537

Compare expression of checked genes

Lus10008156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.