Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008159 [exp] 312 / 8e-107 ND / Lus10028069 [exp] 208 / 9e-68 ND / Lus10000667 [exp] 102 / 2e-25 ND 51 / 4e-07 Lus10000664 [exp] 103 / 5e-25 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10028040 [exp] 100 / 2e-24 AT3G19540 152 / 7e-43 Protein of unknown function (DUF620) (.1) Lus10008162 [exp] 90 / 4e-22 AT1G60370 48 / 5e-07 F-box and associated interaction domains-containing protein (.1) Lus10003349 [exp] 95 / 1e-21 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10007302 [exp] 94 / 1e-21 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10007303 [exp] 93 / 2e-21 AT3G23950 45 / 6e-05 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 48 / 4e-06 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G137200 [exp] 41 / 0.0008 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.011G000700 [exp] 41 / 0.0008 AT3G15910 58 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008157 pacid=23173776 polypeptide=Lus10008157 locus=Lus10008157.g ID=Lus10008157.BGIv1.0 annot-version=v1.0 ATGAATCTGATCGGCAAACTGGGGAACGATCTCCTTGTAGAGATTCTGATTCGGCTCCCGAACCCAAGATCCTCATGCCGCTGCAAATCCGTCTGCAAGC AGTGTGGATCCGTCATCTCCGATCCCAGCTTCAATCGCCAGTTCATTGCTCATCACCAGATTCCGATCGCACAGTGCTTTTTGTCATTTGATCCCTTCGG CTTTTATATTAGCCGGAATGTTGTGCTTGTACCTACTTCAATGTCAGACCGATTGTGCGCAGGATGTGGGAATTTATCAATCTCACAAGGTCATATTCAC ATTATAATGTTGGATGTTGAAGGTGTACGTGATGCTTCAAGTAATGCCTTGAGTGTTTGGAGACTGTATCTAGAAGATGACGAGTATTGGTGGAGCAAAA AATGTGAAATAGAGTTGCAGACGGCCACTTCATCATCACCATCATCATCATTATGGTGCAAGTATGAACTTGACAAGTGCTCTATTTGTCTGCATCCGGA GAAGCCGGAAATTGTCTTCTTTAAATACACGGAGGATTGTGTCTTCTCCTTTGATTCGAGGACGGGGACGACGGGAGAGCCAGAGTTCCTTTCTGCAGTG AAATTACAGTCCTATGAACCCAATTGGAGGGTGTTTCAGCCTAGAGTCTCTTGCTGGGCTACTCCAATTCCAAGGTATGACGACTTTCGAGGTATCTACA ATGGACACTACGATTGCTGGGCTCACAACACTAGTGCTGGTGGTGCAACAACACTTCTCTCAACCAAGAGTTGCGTTCAGAAGAAGCAAAATCTGGTTAA AGACAGCTTGGGTTCAGAAAACAACTCGACATGA
AA sequence Show only first row Show all	>Lus10008157 pacid=23173776 polypeptide=Lus10008157 locus=Lus10008157.g ID=Lus10008157.BGIv1.0 annot-version=v1.0 MNLIGKLGNDLLVEILIRLPNPRSSCRCKSVCKQCGSVISDPSFNRQFIAHHQIPIAQCFLSFDPFGFYISRNVVLVPTSMSDRLCAGCGNLSISQGHIH IIMLDVEGVRDASSNALSVWRLYLEDDEYWWSKKCEIELQTATSSSPSSSLWCKYELDKCSICLHPEKPEIVFFKYTEDCVFSFDSRTGTTGEPEFLSAV KLQSYEPNWRVFQPRVSCWATPIPRYDDFRGIYNGHYDCWAHNTSAGGATTLLSTKSCVQKKQNLVKDSLGSENNST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008157 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	1.4	0.7956
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	1.7	0.8075
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	2.8	0.7718
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	2.8	0.7846
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	5.2	0.7212
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015745 [exp]	6.7	0.7955
AT4G23730			Galactose mutarotase-like supe...		Lus10017549 [exp]	10.4	0.7701
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	11.2	0.7834
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	15.0	0.7460
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10034397 [exp]	20.2	0.6851

Compare expression of checked genes

Lus10008157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.